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BASiCStan

Stan implementation of BASiCS: https://github.com/catavallejos/BASiCS/

https://github.com/alanocallaghan/basicstan

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ✓
    Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.4%) to scientific vocabulary

Keywords

bayesian single-cell-rna-seq

Keywords from Contributors

bioconductor-package gene immune-repertoire single-cell microbiome genomics grna-sequence proteomexchange software sequencing
Last synced: 6 months ago · JSON representation

Repository

Stan implementation of BASiCS: https://github.com/catavallejos/BASiCS/

Basic Info
  • Host: GitHub
  • Owner: alanocallaghan
  • License: gpl-3.0
  • Language: R
  • Default Branch: devel
  • Homepage:
  • Size: 97.7 KB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
bayesian single-cell-rna-seq
Created over 5 years ago · Last pushed about 2 years ago
Metadata Files
License

Owner

  • Name: Alan O'Callaghan
  • Login: Alanocallaghan
  • Kind: user
  • Location: Edinburgh
  • Company: MRC Biostatistics Unit

Biomedical data - stats - programming

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 55
  • Total Committers: 5
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.145
Past Year
  • Commits: 6
  • Committers: 4
  • Avg Commits per committer: 1.5
  • Development Distribution Score (DDS): 0.667
Top Committers
Name Email Commits
Alan O'Callaghan a****n@o****m 47
J Wokaty j****y@s****u 4
J Wokaty j****y 2
Andrew Johnson a****n@a****m 1
lshep l****d@r****g 1
Committer Domains (Top 20 + Academic)
roswellpark.org: 1 arjohnsonau.com: 1 sph.cuny.edu: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 1
  • Total pull requests: 5
  • Average time to close issues: 2 months
  • Average time to close pull requests: 5 months
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.2
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • alanocallaghan (1)
Pull Request Authors
  • alanocallaghan (5)
  • andrjohns (2)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 5,984 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: BASiCStan

Stan implementation of BASiCS

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 5,984 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 29.3%
Downloads: 87.8%
Maintainers (1)
alan.ocallaghan@outlook.com
Last synced: 6 months ago