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rawrr

Access Orbitrap data in R lang using C# .NET assembly - bioconductor package

https://github.com/fgcz/rawrr

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    6 of 7 committers (85.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.3%) to scientific vocabulary

Keywords

fast mass-spectrometry multiplatform orbitrap-ms rpackage

Keywords from Contributors

bioconductor-package gene genomics sequencing ontology grna-sequence immune-repertoire proteomics
Last synced: 6 months ago · JSON representation

Repository

Access Orbitrap data in R lang using C# .NET assembly - bioconductor package

Basic Info
Statistics
  • Stars: 57
  • Watchers: 6
  • Forks: 9
  • Open Issues: 14
  • Releases: 5
Topics
fast mass-spectrometry multiplatform orbitrap-ms rpackage
Created over 5 years ago · Last pushed 8 months ago
Metadata Files
Readme

README.md

Project Status: Active – The project has reached a stable, usable state and is being actively developed. JPR codecov bioc-check Downloads

rawrrHexSticker

rawrr

The package provides access to proprietary Thermo Fisher Scientific Orbitrap instrument data as a stand-alone R package or serves as MsRawFileReaderBackend for the Bioconductor Spectra package. rawrr wraps the functionality of the RawFileReader .NET assembly. Test files are provided by the tartare ExperimentData package.

Install

Please follow the INSTALL instructions provided through

https://bioconductor.org/packages/rawrr/

The latest source package build bioconductor devel branch can be found through

https://fgcz-ms.uzh.ch/~cpanse/rawrr/

Manuscript

http://dx.doi.org/10.1021/acs.jproteome.0c00866

Talks

Owner

  • Name: Functional Genomics Center UZH|ETH Zurich
  • Login: fgcz
  • Kind: organization
  • Email: protinf@fgcz.ethz.ch
  • Location: Switzerland

proteome informatics FGCZ

GitHub Events

Total
  • Create event: 3
  • Release event: 2
  • Issues event: 17
  • Watch event: 5
  • Member event: 1
  • Issue comment event: 75
  • Push event: 14
  • Pull request event: 12
  • Fork event: 1
Last Year
  • Create event: 3
  • Release event: 2
  • Issues event: 17
  • Watch event: 5
  • Member event: 1
  • Issue comment event: 75
  • Push event: 14
  • Pull request event: 12
  • Fork event: 1

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 855
  • Total Committers: 7
  • Avg Commits per committer: 122.143
  • Development Distribution Score (DDS): 0.251
Past Year
  • Commits: 58
  • Committers: 4
  • Avg Commits per committer: 14.5
  • Development Distribution Score (DDS): 0.155
Top Committers
Name Email Commits
Christian Panse cp@f****h 640
Tobias Kockmann t****n@f****h 183
J Wokaty j****y@s****u 10
jasenfinch j****9@a****k 9
Nitesh Turaga n****a@g****m 6
Leonardo Schwarz l****z@f****h 6
Christian Panse c****e@e****h 1
Committer Domains (Top 20 + Academic)
fgcz.ethz.ch: 3 ethz.ch: 1 aber.ac.uk: 1 sph.cuny.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 76
  • Total pull requests: 14
  • Average time to close issues: 2 months
  • Average time to close pull requests: 30 days
  • Total issue authors: 38
  • Total pull request authors: 4
  • Average comments per issue: 5.99
  • Average comments per pull request: 1.07
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 11
  • Pull requests: 7
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 3 hours
  • Issue authors: 8
  • Pull request authors: 2
  • Average comments per issue: 7.18
  • Average comments per pull request: 0.71
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • tobiasko (18)
  • cpanse (17)
  • asepsiswu (3)
  • rokaempf (2)
  • YasinEl (2)
  • leoschwarz (2)
  • marcoherde (1)
  • TirsaT (1)
  • lucaraess (1)
  • SamThilmany (1)
  • papanlipotype (1)
  • rlumpkin (1)
  • Arthfael (1)
  • xianxiongma (1)
  • TaraBartolec (1)
Pull Request Authors
  • leoschwarz (11)
  • cpanse (7)
  • jasenfinch (1)
  • martinkunc (1)
Top Labels
Issue Labels
enhancement (18) help wanted (9) question (5) bug (3) good first issue (3) invalid (1) documentation (1)
Pull Request Labels
enhancement (1)

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 16,515 total
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
bioconductor.org: rawrr

Direct Access to Orbitrap Data and Beyond

  • Versions: 7
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 16,515 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 21.5%
Downloads: 64.6%
Maintainers (1)
cp@fgcz.ethz.ch
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1 depends
  • grDevices * imports
  • graphics * imports
  • stats * imports
  • utils * imports
  • BiocStyle >= 2.5 suggests
  • ExperimentHub * suggests
  • knitr * suggests
  • protViz >= 0.7 suggests
  • rmarkdown * suggests
  • tartare >= 1.5 suggests
  • testthat * suggests
.github/workflows/r.yml actions
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • r-lib/actions/setup-r v1 composite