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BiocPkgTools

Computable build reports, package metadata, and download stats from the Bioconductor project

https://github.com/seandavi/biocpkgtools

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 15 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary

Keywords

bioconductor metadata rstats u24ca289073

Keywords from Contributors

bioconductor-package bioinformatics core-package genomics gene core-services microbiome proteomics immune-repertoire vignette
Last synced: 6 months ago · JSON representation

Repository

Computable build reports, package metadata, and download stats from the Bioconductor project

Basic Info
Statistics
  • Stars: 21
  • Watchers: 6
  • Forks: 13
  • Open Issues: 7
  • Releases: 0
Topics
bioconductor metadata rstats u24ca289073
Created over 8 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License

README.md

BiocPkgTools

R-CMD-check <!-- badges: end -->

Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. This package is a simple collection of functions to access that metadata from R in a tidy data format. The goal is to expose metadata for data mining and value-added functionality such as package searching, text mining, and analytics on packages.

Functionality includes access to computable versions of:

  • Download statistics
  • Detailed package information
  • Package dependendencies (and reverse dependencies)
  • Package BiocViews categories
  • Build reports
  • Vignettes (including examples of text mining)

Owner

  • Name: Sean Davis
  • Login: seandavi
  • Kind: user
  • Location: Bethesda, MD, 20892, USA
  • Company: National Cancer Institute, National Institutes of Health

- Pediatric oncologist - Cancer researcher - Data scientist - Community organizer

GitHub Events

Total
  • Issues event: 3
  • Watch event: 2
  • Delete event: 4
  • Issue comment event: 11
  • Push event: 52
  • Pull request review event: 1
  • Pull request review comment event: 1
  • Pull request event: 2
  • Fork event: 3
  • Create event: 6
Last Year
  • Issues event: 3
  • Watch event: 2
  • Delete event: 4
  • Issue comment event: 11
  • Push event: 52
  • Pull request review event: 1
  • Pull request review comment event: 1
  • Pull request event: 2
  • Fork event: 3
  • Create event: 6

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 544
  • Total Committers: 15
  • Avg Commits per committer: 36.267
  • Development Distribution Score (DDS): 0.399
Past Year
  • Commits: 42
  • Committers: 4
  • Avg Commits per committer: 10.5
  • Development Distribution Score (DDS): 0.119
Top Committers
Name Email Commits
LiNk-NY m****z@r****g 327
Sean Davis s****i@g****m 118
FelixErnst f****t@o****m 21
Shians r****u@g****m 16
Nitesh Turaga n****a@g****m 14
J Wokaty j****y 14
Mike Smith g****h@g****m 7
Charlotte Soneson c****n@g****m 5
Vince Carey s****c@c****u 5
lshep s****l@g****m 5
Martin Morgan m****n@r****g 4
vobencha v****a@g****m 3
Robert Castelo r****o@u****u 2
A Wokaty a****y@s****u 2
Hervé Pagès h****b@g****m 1
Committer Domains (Top 20 + Academic)
roswellpark.org: 2 sph.cuny.edu: 1 upf.edu: 1 channing.harvard.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 33
  • Total pull requests: 40
  • Average time to close issues: 7 months
  • Average time to close pull requests: 9 days
  • Total issue authors: 12
  • Total pull request authors: 10
  • Average comments per issue: 1.91
  • Average comments per pull request: 0.83
  • Merged pull requests: 38
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 6 days
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 2.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • seandavi (8)
  • LiNk-NY (5)
  • vjcitn (4)
  • Shians (3)
  • lshep (3)
  • mtmorgan (3)
  • HenrikBengtsson (2)
  • szhorvat (1)
  • mikelove (1)
  • bschilder (1)
  • lcolladotor (1)
  • llrs (1)
  • jeroen (1)
Pull Request Authors
  • LiNk-NY (11)
  • Shians (6)
  • jwokaty (5)
  • lshep (4)
  • FelixErnst (4)
  • vjcitn (3)
  • mtmorgan (3)
  • grimbough (2)
  • rcastelo (2)
  • csoneson (2)
Top Labels
Issue Labels
enhancement (6) bug (2) help wanted (2)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 21,460 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
bioconductor.org: BiocPkgTools

Collection of simple tools for learning about Bioconductor Packages

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 21,460 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Stargazers count: 5.3%
Forks count: 6.5%
Average: 13.4%
Downloads: 55.3%
Maintainers (1)
seandavi@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • htmlwidgets * depends
  • BiocFileCache * imports
  • BiocManager * imports
  • DT * imports
  • RBGL * imports
  • biocViews * imports
  • dplyr * imports
  • gh * imports
  • graph * imports
  • htmltools * imports
  • httr * imports
  • igraph * imports
  • jsonlite * imports
  • magrittr * imports
  • methods * imports
  • readr * imports
  • rlang * imports
  • rvest * imports
  • stringr * imports
  • tibble * imports
  • tools * imports
  • utils * imports
  • xml2 * imports
  • BiocStyle * suggests
  • DiagrammeR * suggests
  • SummarizedExperiment * suggests
  • blastula * suggests
  • clipr * suggests
  • kableExtra * suggests
  • knitr * suggests
  • lubridate * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • tm * suggests
  • visNetwork * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v1 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite
.github/workflows/pkgdown.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite