MetaboAnnotation
High level functionality to support and simplify metabolomics data annotation.
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 7 committers (28.6%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.7%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
High level functionality to support and simplify metabolomics data annotation.
Basic Info
- Host: GitHub
- Owner: rformassspectrometry
- Language: R
- Default Branch: main
- Homepage: https://rformassspectrometry.github.io/MetaboAnnotation/
- Size: 14.5 MB
Statistics
- Stars: 16
- Watchers: 5
- Forks: 9
- Open Issues: 19
- Releases: 0
Topics
Metadata Files
README.md
MetaboAnnotation
High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.
For more information see the package homepage.
Installation
The package can be installed with
r
install.packages("BiocManager")
BiocManager::install("MetaboAnnotation")
Contributions
Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.
Owner
- Name: RforMassSpectrometry
- Login: rformassspectrometry
- Kind: organization
- Email: maintainer@rformassspectrometry.org
- Website: https://www.rformassspectrometry.org/
- Repositories: 33
- Profile: https://github.com/rformassspectrometry
R packages for mass spectrometry
GitHub Events
Total
- Issues event: 3
- Watch event: 1
- Delete event: 1
- Issue comment event: 3
- Push event: 15
- Pull request review event: 1
- Pull request review comment event: 1
- Pull request event: 4
- Create event: 1
Last Year
- Issues event: 3
- Watch event: 1
- Delete event: 1
- Issue comment event: 3
- Push event: 15
- Pull request review event: 1
- Pull request review comment event: 1
- Pull request event: 4
- Create event: 1
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| jorainer | j****r@g****m | 148 |
| andreavicini | a****i@m****t | 52 |
| Michael Witting | m****g@h****e | 21 |
| Philippine Louail | p****l@o****m | 15 |
| J Wokaty | j****y@s****u | 10 |
| Rémy | 1****B | 4 |
| Nitesh Turaga | n****a@g****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 53
- Total pull requests: 54
- Average time to close issues: 28 days
- Average time to close pull requests: 6 days
- Total issue authors: 16
- Total pull request authors: 3
- Average comments per issue: 3.85
- Average comments per pull request: 1.22
- Merged pull requests: 53
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 4
- Average time to close issues: 6 days
- Average time to close pull requests: about 2 hours
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 1.67
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jorainer (25)
- michaelwitting (11)
- stanstrup (4)
- jmbadia (1)
- Adafede (1)
- tiwa1125 (1)
- RemyDeB (1)
- chufz (1)
- bitbarbie (1)
- Marievlm (1)
- YANGJJ93MS (1)
- mar-garcia (1)
- hvaret (1)
- Leonie-P (1)
- LiesaSalzer (1)
Pull Request Authors
- jorainer (37)
- andreavicini (16)
- michaelwitting (6)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 17,118 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
bioconductor.org: MetaboAnnotation
Utilities for Annotation of Metabolomics Data
- Homepage: https://github.com/RforMassSpectrometry/MetaboAnnotation
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/MetaboAnnotation/inst/doc/MetaboAnnotation.pdf
- License: Artistic-2.0
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Latest release: 1.12.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.0.0 depends
- BiocGenerics * imports
- BiocParallel * imports
- MetaboCoreUtils * imports
- MsCoreUtils * imports
- ProtGenerics * imports
- QFeatures * imports
- S4Vectors * imports
- Spectra >= 1.5.7 imports
- SummarizedExperiment * imports
- graphics * imports
- methods * imports
- BiocStyle * suggests
- DT * suggests
- knitr * suggests
- msdata * suggests
- plotly * suggests
- rmarkdown * suggests
- shiny * suggests
- shinyjs * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite