EpiDISH

This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.

https://github.com/sjczheng/epidish

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
2 of 13 committers (15.4%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (2.3%) to scientific vocabulary

Keywords from Contributors

bioconductor-package genomics gene ontology matrix-library genome-biology methylation statistical-analysis cancer-genome-atlas cancer-genomics

Last synced: 10 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: sjczheng
Language: R
Default Branch: devel
Size: 4.54 MB

Statistics

Stars: 53
Watchers: 4
Forks: 13
Open Issues: 6
Releases: 0

Created almost 10 years ago · Last pushed 12 months ago

Metadata Files

Readme

README.md

./vignettes/EpiDISH.Rmd

Owner

Name: Shijie C. Zheng
Login: sjczheng
Kind: user

Repositories: 1
Profile: https://github.com/sjczheng

GitHub Events

Total

Issues event: 2
Watch event: 8
Delete event: 1
Push event: 1
Fork event: 2
Create event: 1

Last Year

Issues event: 2
Watch event: 8
Delete event: 1
Push event: 1
Fork event: 2
Create event: 1

Committers

Last synced: over 2 years ago

All Time

Total Commits: 99
Total Committers: 13
Avg Commits per committer: 7.615
Development Distribution Score (DDS): 0.687

Past Year

Commits: 3
Committers: 2
Avg Commits per committer: 1.5
Development Distribution Score (DDS): 0.333

Top Committers

Name	Email	Commits
sjczheng	s**g@g**m	31
Shijie Charles Zheng	C**s@z**n	16
Shijie C. Zheng	s**g@g**m	16
Nitesh Turaga	n**a@g**m	14
Shijie Charles Zheng	C**s@s**u	7
Hervé Pagès	h**s@f**g	2
J Wokaty	j**y@s**u	2
Shijie Charles Zheng	C**s@S**l	2
vobencha	v**a@g**m	2
Shijie Zheng	s**e@z**n	2
Shijie Zheng	s**e@S**l	2
vobencha	v**n@r**g	2
Martin Morgan	m**n@f**g	1

Committer Domains (Top 20 + Academic)

fhcrc.org: 1 roswellpark.org: 1 zhengshijie-laptop.icb.ac.cn: 1 sph.cuny.edu: 1 fredhutch.org: 1 shijies-mbp.welch.jhu.edu: 1 zhengsijie-laptop.icb.ac.cn: 1

Packages

Total packages: 1
Total downloads:
- bioconductor 44,898 total

Total dependent packages: 2
Total dependent repositories: 0
Total versions: 5
Total maintainers: 1

bioconductor.org: EpiDISH

Epigenetic Dissection of Intra-Sample-Heterogeneity

Homepage: https://github.com/sjczheng/EpiDISH
Documentation: https://bioconductor.org/packages/release/bioc/vignettes/EpiDISH/inst/doc/EpiDISH.pdf
License: GPL-2
Latest release: 2.24.0
published about 1 year ago

Versions: 5
Dependent Packages: 2
Dependent Repositories: 0
Downloads: 44,898 Total

Rankings

Dependent repos count: 0.0%

Dependent packages count: 0.0%

Stargazers count: 4.7%

Forks count: 5.7%

Average: 10.0%

Downloads: 39.8%

Maintainers (1)

shijieczheng@gmail.com

Last synced: 11 months ago

Dependencies

DESCRIPTION cran

R >= 4.1 depends
MASS * imports
Matrix * imports
e1071 * imports
locfdr * imports
matrixStats * imports
parallel * imports
quadprog * imports
stats * imports
stringr * imports
Biobase * suggests
BiocStyle * suggests
GEOquery * suggests
knitr * suggests
rmarkdown * suggests
roxygen2 * suggests
testthat * suggests

ecosyste.ms

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