Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 20 committers (10.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.1%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
R Interface to the ProteomeXchange Repository
Basic Info
- Host: GitHub
- Owner: lgatto
- Language: R
- Default Branch: master
- Homepage: http://lgatto.github.io/rpx/
- Size: 1.41 MB
Statistics
- Stars: 5
- Watchers: 2
- Forks: 2
- Open Issues: 11
- Releases: 0
Topics
Metadata Files
README.md
R Interface to the ProteomeXchange Repository
Thre rpx package is a simple programmatic interface to proteomics
data available in the ProteomeXchange repository. It uses a
ProteomeXchange identifier such as PXD000001 to find and download
files associated with that project. The official Bioconductor is
here. The
GitHub page allows to browse the documentation and the vignette.
Installation
To install the version matching your local R installation from the Bioconductor repository:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("rpx")
And to install the very latest version from GitHub:
BiocManager::install("lgatto/rpx")
For a similar python-based software, see
ppx by Will Fondrie.
Owner
- Name: Laurent Gatto
- Login: lgatto
- Kind: user
- Location: Belgium
- Company: de Duve Institute, UCLouvain
- Website: https://fosstodon.org/@lgatto
- Repositories: 98
- Profile: https://github.com/lgatto
Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.
GitHub Events
Total
- Issues event: 3
- Issue comment event: 8
- Push event: 4
Last Year
- Issues event: 3
- Issue comment event: 8
- Push event: 4
Committers
Last synced: over 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| lgatto | l****o@g****m | 106 |
| Laurent Gatto | l****o@u****e | 71 |
| Laurent | l****0@c****k | 42 |
| Laurent Gatto | l****o@d****e | 40 |
| l.gatto | l****o@b****8 | 24 |
| d.tenenbaum | d****m@b****8 | 18 |
| Dan Tenenbaum | d****a@f****g | 17 |
| Nitesh Turaga | n****a@g****m | 14 |
| Herve Pages | h****s@f****g | 4 |
| J Wokaty | j****y | 2 |
| Sebastian Gibb | m****l@s****e | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| J Wokaty | j****y@s****u | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Kayla-Morrell | k****l@r****g | 1 |
| LiNk-NY | m****9@g****m | 1 |
| Valerie Obenchain | v****a@f****g | 1 |
| lshep | l****d@r****g | 1 |
| v.obenchain | v****n@b****8 | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 4
- Total pull requests: 0
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Total issue authors: 4
- Total pull request authors: 0
- Average comments per issue: 2.75
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 4
- Pull requests: 0
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Issue authors: 4
- Pull request authors: 0
- Average comments per issue: 2.75
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- vdtoorn (1)
- lgatto (1)
- jafarilab (1)
- JangHuang (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 60,973 total
- Total dependent packages: 3
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: rpx
R Interface to the ProteomeXchange Repository
- Homepage: https://github.com/lgatto/rpx
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/rpx/inst/doc/rpx.pdf
- License: GPL-2
-
Latest release: 2.16.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- methods * depends
- BiocFileCache * imports
- RCurl * imports
- curl * imports
- jsonlite * imports
- utils * imports
- xml2 * imports
- BiocStyle * suggests
- Biostrings * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests