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MsBackendMsp

Mass Spectrometry Data Backend for MSP Files

https://github.com/rformassspectrometry/msbackendmsp

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 5 committers (40.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary

Keywords

infrastructure mass-spectrometry rstats

Keywords from Contributors

bioconductor-package bioconductor metabolomics feature-detection peak-detection genes sequencing genomics immune-repertoire grna-sequence
Last synced: 6 months ago · JSON representation

Repository

Mass Spectrometry Data Backend for MSP Files

Basic Info
Statistics
  • Stars: 5
  • Watchers: 3
  • Forks: 4
  • Open Issues: 7
  • Releases: 0
Topics
infrastructure mass-spectrometry rstats
Created almost 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.md

Mass Spectrometry Data Backend for NIST MSP Files

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov license years in bioc Ranking by downloads build release build devel

The MsBackendMsp package provides functionality to import and handle MS/MS spectrum data from MSP files. The package defines the MsBackendMsp backend which can be used to import and use MS2 spectrum data from msp files with the Spectra R package.

For more information see the package vignette or the package homepage.

Installation

The package can be installed with

r install.packages("BiocManager") BiocManager::install("MsBackendMsp")

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.

Owner

  • Name: RforMassSpectrometry
  • Login: rformassspectrometry
  • Kind: organization
  • Email: maintainer@rformassspectrometry.org

R packages for mass spectrometry

GitHub Events

Total
  • Push event: 3
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Push event: 3
  • Pull request event: 2
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 46
  • Total Committers: 5
  • Avg Commits per committer: 9.2
  • Development Distribution Score (DDS): 0.413
Past Year
  • Commits: 10
  • Committers: 2
  • Avg Commits per committer: 5.0
  • Development Distribution Score (DDS): 0.2
Top Committers
Name Email Commits
jorainer j****r@g****m 27
Michael Witting m****g@h****e 9
Steffen Neumann s****n@i****e 6
J Wokaty j****y@s****u 2
Nitesh Turaga n****a@g****m 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 ipb-halle.de: 1 helmholtz-muenchen.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 25 minutes
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 25 minutes
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cbroeckl (1)
Pull Request Authors
  • jorainer (4)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 14,870 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: MsBackendMsp

Mass Spectrometry Data Backend for NIST msp Files

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 14,870 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Forks count: 14.4%
Stargazers count: 21.8%
Average: 24.6%
Downloads: 87.0%
Maintainers (1)
Johannes.Rainer@eurac.edu
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • Spectra >= 1.5.14 depends
  • BiocParallel * imports
  • IRanges * imports
  • MsCoreUtils * imports
  • S4Vectors * imports
  • methods * imports
  • stats * imports
  • BiocStyle >= 2.5.19 suggests
  • knitr >= 1.1.0 suggests
  • rmarkdown * suggests
  • roxygen2 * suggests
  • testthat * suggests
.github/workflows/check-bioc.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite