miRBaseConverter
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 8 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.7%) to scientific vocabulary
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: taoshengxu
- Language: R
- Default Branch: master
- Size: 4.39 MB
Statistics
- Stars: 2
- Watchers: 0
- Forks: 1
- Open Issues: 4
- Releases: 0
Metadata Files
README.md
miRBaseConverter
miRBaseConverter is an R/Bioconductor package for converting and retrieving the definition of miRNAs ( Names, Accessions, Sequences, Families and others) in different miRBase versions ( From miRBase version 6 to version 22 [ The latest version ] ). A tiny built-in database is embedded in the miRBaseConverter R package for retrieving miRNA information efficiently.
Installing miRBaseConverter
{r,eval=FALSE,warning=FALSE,message=FALSE}
devtools::install_github("taoshengxu/miRBaseConverter")
Manual
The tutorial and examples of miRBaseConverter pacakge can be found here.
Shiny application
The online application with interactive interface of this package can be accessed in http://nugget.unisa.edu.au:3838/miRBaseConverter or
https://taoshengxu.shinyapps.io/miRBaseConverter/.
Citation
Please cite the following article when using miRBaseConverter:
Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Weijia Zhang, Jie Gui, Kui Yu, Jiuyong Li and Thuc Duy Le. miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase. BMC Bioinformatics 19 (Suppl 19) :514. doi: https://doi.org/10.1186/s12859-018-2531-5
Owner
- Name: Taosheng Xu
- Login: taoshengxu
- Kind: user
- Repositories: 2
- Profile: https://github.com/taoshengxu
GitHub Events
Total
- Watch event: 1
Last Year
- Watch event: 1
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Taosheng Xu | t****x@g****m | 37 |
| Nitesh Turaga | n****a@g****m | 4 |
| Taosheng Xu | 3****u | 3 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 3
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 3
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lshep (1)
- leipzig (1)
- EasyPiPi (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 18,688 total
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: miRBaseConverter
A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
- Homepage: https://github.com/taoshengxu/miRBaseConverter
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/miRBaseConverter/inst/doc/miRBaseConverter.pdf
- License: GPL (>= 2)
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Latest release: 1.32.0
published about 1 year ago