Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
6 of 7 committers (85.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: ChenLaboratory
- License: gpl-3.0
- Language: R
- Default Branch: devel
- Homepage: https://chenlaboratory.github.io/scider/
- Size: 48.3 MB
Statistics
- Stars: 7
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
scider: Spatial cell-type inter-correlation by density in R. 
scider implements functions to analyse spatial transcriptomics data with cell type annotations by performing cell type correlation via density estimation and cell type co-localization via real number distance. Functions include density estimation, statistical modelling and visualizations.
Install released version form Bioconductor
``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("scider") ```
Install development version from GitHub
library(devtools)
devtools::install_github("ChenLaboratory/scider")
Owner
- Name: Chen Lab
- Login: ChenLaboratory
- Kind: organization
- Location: Australia
- Website: https://www.wehi.edu.au/researcher/yunshun-chen/
- Repositories: 1
- Profile: https://github.com/ChenLaboratory
ACRF Cancer Biology and Stem Cell & Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research (WEHI)
GitHub Events
Total
- Issues event: 6
- Watch event: 3
- Delete event: 1
- Issue comment event: 9
- Push event: 115
- Pull request event: 2
- Create event: 1
Last Year
- Issues event: 6
- Watch event: 3
- Delete event: 1
- Issue comment event: 9
- Push event: 115
- Pull request event: 2
- Create event: 1
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Yunshun Chen | y****n@w****u | 72 |
| ningbioinfo | l****n@w****u | 52 |
| Mengbo-Li | m****3@g****m | 43 |
| Mengbo Li | l****e@w****u | 33 |
| ningbioinfo | n****u@a****u | 17 |
| Quoc Hoang Nguyen | n****q@w****u | 16 |
| J Wokaty | j****y@s****u | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 4
- Total pull requests: 2
- Average time to close issues: 20 days
- Average time to close pull requests: less than a minute
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 1.75
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 4
- Pull requests: 2
- Average time to close issues: 20 days
- Average time to close pull requests: less than a minute
- Issue authors: 3
- Pull request authors: 1
- Average comments per issue: 1.75
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- IterateTillWin (2)
- Evenlyeven (1)
- yaoyao-zhou-pos (1)
Pull Request Authors
- ningbioinfo (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 4,608 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 4
- Total maintainers: 1
bioconductor.org: scider
Spatial cell-type inter-correlation by density in R
- Homepage: https://github.com/ChenLaboratory/scider https://chenlaboratory.github.io/scider/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/scider/inst/doc/scider.pdf
- License: GPL-3 + file LICENSE
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Latest release: 1.6.0
published about 1 year ago