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Open Source Science

RiboCrypt

https://github.com/m-swirski/ribocrypt

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 7 committers (28.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary

Keywords from Contributors

genome proteome bioconductor-package gene sequencing ontology grna-sequence immune-repertoire metagenomics
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: m-swirski
  • License: mit
  • Language: R
  • Default Branch: master
  • Homepage: https://ribocrypt.org
  • Size: 8.61 MB
Statistics
  • Stars: 5
  • Watchers: 3
  • Forks: 3
  • Open Issues: 0
  • Releases: 0
Created almost 5 years ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

RiboCrypt: R Package for interactive visualization and browsing NGS data.

Online app

See our webpage containing thousands of Ribosome profiling datasets to explore!

RiboCrypt.org

Installation

We advice you to use github devel version, as this package is under heavy development, to not lose out on new features!

Package is available from bioconductor (3.16, R version >= 4.0.0) r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("RiboCrypt")

Development version on bioconductor (3.17, R version >= 4.0.0) r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("RiboCrypt", version = "devel")

Package is also available here on github r if (!requireNamespace("devtools", quietly=TRUE)) install.packages("devtools") devtools::install_github("m-swirski/RiboCrypt")

Tutorials

For extensive tutorials, see bioconductor help tutorials (vignettes):

Owner

  • Login: m-swirski
  • Kind: user

GitHub Events

Total
  • Push event: 87
Last Year
  • Push event: 87

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 272
  • Total Committers: 7
  • Avg Commits per committer: 38.857
  • Development Distribution Score (DDS): 0.485
Past Year
  • Commits: 174
  • Committers: 6
  • Avg Commits per committer: 29.0
  • Development Distribution Score (DDS): 0.368
Top Committers
Name Email Commits
Roleren h****n@h****m 140
Miswi m****i@s****l 90
Donut96 b****l@g****m 29
Nitesh Turaga n****a@g****m 4
JokingHero k****n@g****m 4
m-swirski 3****i 3
J Wokaty j****y@s****u 2
Committer Domains (Top 20 + Academic)
sph.cuny.edu: 1 student.uw.edu.pl: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 12
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 days
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.08
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • bartma11 (8)
  • JokingHero (4)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 5,734 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: RiboCrypt

Interactive visualization in genomics

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 5,734 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 30.5%
Downloads: 91.5%
Maintainers (1)
michal.swirski@uw.edu.pl
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • ORFik >= 1.13.12 depends
  • R >= 3.6.0 depends
  • BiocGenerics * imports
  • BiocParallel * imports
  • Biostrings * imports
  • GenomeInfoDb * imports
  • GenomicFeatures * imports
  • GenomicRanges * imports
  • IRanges * imports
  • data.table * imports
  • dplyr * imports
  • ggplot2 * imports
  • here * imports
  • htmlwidgets * imports
  • plotly * imports
  • rlang * imports
  • shiny * imports
  • BSgenome * suggests
  • BSgenome.Hsapiens.UCSC.hg19 * suggests
  • BiocStyle * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests