Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 19 committers (15.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.0%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
genomics
gene
metabolomics
mass-spectrometry
bioconductor
bioc
bioinformatics
core-package
proteomics
Last synced: 10 months ago
·
JSON representation
Repository
Grid and ggplot2 based visualization for biological data
Statistics
- Stars: 115
- Watchers: 9
- Forks: 25
- Open Issues: 75
- Releases: 0
Created almost 15 years ago
· Last pushed 11 months ago
Metadata Files
Readme
Changelog
README.md
INSTALL
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("ggbio")
Owner
- Name: Michael Lawrence
- Login: lawremi
- Kind: user
- Location: Bay area
- Company: @Genentech
- Repositories: 24
- Profile: https://github.com/lawremi
Member of R and @Bioconductor core.
GitHub Events
Total
- Watch event: 3
- Issue comment event: 1
- Push event: 1
- Pull request event: 1
- Fork event: 1
Last Year
- Watch event: 3
- Issue comment event: 1
- Push event: 1
- Pull request event: 1
- Fork event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Tengfei Yin | y****i@g****m | 287 |
| tengfei | t****i@t****0 | 147 |
| Michael Lawrence | l****i@i****u | 109 |
| tengfei | t****i@t****) | 81 |
| Sanchit Saini | s****4@g****m | 55 |
| Michael Lawrence | m****a@g****m | 32 |
| Dan Tenenbaum | d****a@f****g | 28 |
| Herve Pages | h****s@f****g | 28 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y@s****u | 6 |
| Hervé Pagès | h****s@f****g | 5 |
| Dianne Cook | v****t@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Martin Morgan | m****n@f****g | 1 |
| Marc Carlson | m****n@f****g | 1 |
| Jennifer Chang | j****g@i****u | 1 |
| LiNk-NY | m****9@g****m | 1 |
| Sonali Arora | s****a@f****g | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 5
iastate.edu: 2
roswellpark.org: 1
fredhutch.org: 1
sph.cuny.edu: 1
gene.com: 1
tengfei-t510.(none): 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 75
- Total pull requests: 27
- Average time to close issues: 5 months
- Average time to close pull requests: 5 months
- Total issue authors: 70
- Total pull request authors: 3
- Average comments per issue: 2.36
- Average comments per pull request: 0.3
- Merged pull requests: 17
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Deleetdk (3)
- ghbore (2)
- andronekomimi (2)
- chesterlee7246 (2)
- grimbough (1)
- annaquaglieri16 (1)
- mgabriel01 (1)
- pwwang (1)
- jmzeng1314 (1)
- twooldridge (1)
- BatoolMM (1)
- wpbone06 (1)
- mevers (1)
- ramiromagno (1)
- zhang616123 (1)
Pull Request Authors
- sanchit-saini (28)
- Rohit-Satyam (1)
- sam217pa (1)
- teunbrand (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 497,499 total
- Total dependent packages: 27
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
bioconductor.org: ggbio
Visualization tools for genomic data
- Homepage: https://lawremi.github.io/ggbio/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/ggbio/inst/doc/ggbio.pdf
- License: Artistic-2.0
-
Latest release: 1.56.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Stargazers count: 1.9%
Forks count: 2.1%
Average: 2.2%
Dependent packages count: 2.9%
Downloads: 4.3%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- BiocGenerics * depends
- ggplot2 >= 1.0.0 depends
- methods * depends
- AnnotationDbi * imports
- AnnotationFilter * imports
- BSgenome * imports
- Biobase * imports
- Biostrings * imports
- GGally * imports
- GenomeInfoDb >= 1.1.3 imports
- GenomicAlignments >= 1.1.16 imports
- GenomicFeatures >= 1.29.11 imports
- GenomicRanges >= 1.29.14 imports
- Hmisc * imports
- IRanges >= 2.11.16 imports
- OrganismDbi * imports
- Rsamtools >= 1.17.28 imports
- S4Vectors >= 0.13.13 imports
- SummarizedExperiment * imports
- VariantAnnotation >= 1.11.4 imports
- biovizBase >= 1.29.2 imports
- ensembldb >= 1.99.13 imports
- grDevices * imports
- graphics * imports
- grid * imports
- gridExtra * imports
- gtable * imports
- reshape2 * imports
- rlang * imports
- rtracklayer >= 1.25.16 imports
- scales * imports
- stats * imports
- utils * imports
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- BiocStyle * suggests
- EnsDb.Hsapiens.v75 * suggests
- Homo.sapiens * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- TxDb.Mmusculus.UCSC.mm9.knownGene * suggests
- knitr * suggests
- testthat * suggests
- tinytex * suggests
- vsn * suggests
.github/workflows/R-CMD-check-and-coverage.yaml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite