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airpart

Differential allelic imbalancepartition across group of cells

https://github.com/wancen/airpart

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 6 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.8%) to scientific vocabulary

Keywords from Contributors

genomics immune-repertoire grna-sequence ontology bioconductor-package gene sequencing bioconductor tsne transcripts
Last synced: 11 months ago · JSON representation

Repository

Differential allelic imbalancepartition across group of cells

Basic Info
  • Host: GitHub
  • Owner: Wancen
  • Language: R
  • Default Branch: main
  • Size: 333 KB
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 5 years ago · Last pushed over 3 years ago

https://github.com/Wancen/airpart/blob/main/ 

# airpart
Differential allelic imbalance partition across group of cells

![framwork](https://github.com/Wancen/airpartpaper/blob/main/framework.jpg)

# Install packages
```
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("airpart")
```

# Documentation
To view documentation for the version of this package installed in your system, start R and enter:
```
browseVignettes("airpart")
```

# Citation 
from within R, enter `citation("airpart")`:

Mu W, Sarkar H, Srivastava A, Choi K, Patro R, Love MI (2022). Airpart: Interpretable statistical models for analyzing allelic imbalance in single-cell datasets. Bioinformatics. doi: 10.1093/bioinformatics/btac212.

Owner

  • Login: Wancen
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 184
  • Total Committers: 6
  • Avg Commits per committer: 30.667
  • Development Distribution Score (DDS): 0.353
Past Year
  • Commits: 5
  • Committers: 4
  • Avg Commits per committer: 1.25
  • Development Distribution Score (DDS): 0.6
Top Committers
Name Email Commits
Wancen 4****n 119
mikelove m****e@g****m 55
Nitesh Turaga n****a@g****m 6
J Wokaty j****y@s****u 2
Wancen w****n@l****u 1
Wancen Mu w****n@c****u 1
Committer Domains (Top 20 + Academic)
c130404-ood.ll.unc.edu: 1 live.unc.edu: 1 sph.cuny.edu: 1

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 9,696 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: airpart

Differential cell-type-specific allelic imbalance

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 9,696 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 31.5%
Downloads: 94.6%
Maintainers (1)
wancen@live.unc.edu
Last synced: 11 months ago