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illuminaio

🔬 R package: This is the Bioconductor devel version of the illuminaio package.

https://github.com/henrikbengtsson/illuminaio

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 13 committers (23.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary

Keywords

bioconductor package r

Keywords from Contributors

bioconductor-package gene genomics core-package bioinformatics hdf5 rhdf5 derfinder rnaseq proteomics
Last synced: 6 months ago · JSON representation

Repository

🔬 R package: This is the Bioconductor devel version of the illuminaio package.

Basic Info
Statistics
  • Stars: 5
  • Watchers: 4
  • Forks: 2
  • Open Issues: 8
  • Releases: 0
Topics
bioconductor package r
Created over 11 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Contributing

README.md

Bioconductor since badge Bioconductor build status Bioconductor build status R CMD check status Coverage Status

illuminaio: Parsing Illumina Microarray Output Files

Installation

R package illuminaio is available on Bioconductor and can be installed in R as:

r install.packages("BiocManager") BiocManager::install("illuminaio")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use: r remotes::install_github("HenrikBengtsson/illuminaio", ref="develop") This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have Rtools installed and macOS users need to have Xcode installed.

Contributing

To contribute to this package, please see CONTRIBUTING.md.

Owner

  • Name: Henrik Bengtsson
  • Login: HenrikBengtsson
  • Kind: user
  • Company: UCSF

Assoc Professor. R Foundation. R Consortium. Many R packages, e.g. future & matrixStats.

GitHub Events

Total
Last Year

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 184
  • Total Committers: 13
  • Avg Commits per committer: 14.154
  • Development Distribution Score (DDS): 0.489
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Henrik Bengtsson hb@a****g 94
Kasper D. Hansen k****n@s****u 31
Dan Tenenbaum d****a@f****g 14
Mike Smith m****0@c****k 14
Nitesh Turaga n****a@g****m 14
Herve Pages h****s@f****g 4
Kasper Daniel Hansen k****n@g****m 3
Hervé Pagès h****s@f****g 2
J Wokaty j****y@s****u 2
vobencha v****n@r****g 2
vobencha v****a@g****m 2
Marc Carlson m****n@f****g 1
Mike Smith g****h@g****m 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 3 roswellpark.org: 1 sph.cuny.edu: 1 fredhutch.org: 1 cam.ac.uk: 1 stat.berkeley.edu: 1 aroma-project.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 24
  • Total pull requests: 2
  • Average time to close issues: 2 months
  • Average time to close pull requests: 39 minutes
  • Total issue authors: 11
  • Total pull request authors: 2
  • Average comments per issue: 1.92
  • Average comments per pull request: 2.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HenrikBengtsson (14)
  • kasperdanielhansen (1)
  • mistrm82 (1)
  • brazilbean (1)
  • AliceCheng7 (1)
  • zillurbmb51 (1)
  • RaphaelRaphael (1)
  • raw937 (1)
  • sonali8434 (1)
  • prantik1998 (1)
  • grafab (1)
Pull Request Authors
  • kasperdanielhansen (1)
  • zwdzwd (1)
Top Labels
Issue Labels
help wanted (5) enhancement (4) bug (1) invalid (1) question (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 482,384 total
  • Total dependent packages: 12
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: illuminaio

Parsing Illumina Microarray Output Files

  • Versions: 5
  • Dependent Packages: 12
  • Dependent Repositories: 0
  • Downloads: 482,384 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 4.3%
Downloads: 4.5%
Average: 9.0%
Forks count: 18.0%
Stargazers count: 18.1%
Maintainers (1)
kasperdanielhansen@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • base64 * imports
  • BiocGenerics * suggests
  • BiocStyle * suggests
  • IlluminaDataTestFiles >= 1.0.2 suggests
  • RUnit * suggests
.github/workflows/R-CMD-check-valgrind.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/R-CMD-check.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-tinytex v2 composite
.github/workflows/covr.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite