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metamisc

This is the official repository of the R package metamisc

https://github.com/smartdata-analysis-and-statistics/metamisc

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.3%) to scientific vocabulary

Keywords

cran meta-analysis prognosis prognostic-models r r-package
Last synced: 6 months ago · JSON representation

Repository

This is the official repository of the R package metamisc

Basic Info
Statistics
  • Stars: 7
  • Watchers: 1
  • Forks: 0
  • Open Issues: 2
  • Releases: 1
Topics
cran meta-analysis prognosis prognostic-models r r-package
Created over 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# metamisc 


[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/metamisc)](https://cran.r-project.org/package=metamisc)
[![metacran
downloads](https://cranlogs.r-pkg.org/badges/last-month/metamisc)](https://cran.r-project.org/package=metamisc)
[![R-CMD-check](https://github.com/smartdata-analysis-and-statistics/metamisc/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/smartdata-analysis-and-statistics/metamisc/actions/workflows/R-CMD-check.yaml)




This is the official repository of the R package **metamisc**, which was developed to facilitate meta-analysis of diagnosis and prognosis research studies. The package includes functions for the following tasks:

* To develop and validate multivariable prediction models from datasets with clustering (de Jong et al., 2021)
* To summarize multiple estimates of prediction model discrimination and calibration performance (Debray et al., 2019)
* To evaluate funnel plot asymmetry (Debray et al., 2018)


## Installation

The `metamisc` package can be installed from CRAN as follows:

``` r
install.packages("metamisc")
```

You can install the development version of metamisc from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("smartdata-analysis-and-statistics/metamisc")
```

## JASP
A visual interface to the software has been implemented by JASP 

## References
de Jong VMT, Moons KGM, Eijkemans MJC, Riley RD, Debray TPA. Developing more generalizable prediction models from pooled studies and large clustered data sets. *Stat Med*. 2021 May 5;40(15):3533–59. 

Debray TPA, Moons KGM, Riley RD. Detecting small-study effects and funnel plot asymmetry in meta-analysis of survival data: a comparison of new and existing tests. *Res Syn Meth*. 2018;9(1):41–50. 

Debray TPA, Damen JAAG, Riley R, Snell KIE, Reitsma JB, Hooft L, et al. A framework for meta-analysis of prediction model studies with binary and time-to-event outcomes. *Stat Methods Med Res*. 2019 Sep;28(9):2768–86.

Owner

  • Name: Smart Data Analysis and Statistics
  • Login: smartdata-analysis-and-statistics
  • Kind: organization
  • Location: Netherlands

GitHub Events

Total
  • Watch event: 2
  • Push event: 5
Last Year
  • Watch event: 2
  • Push event: 5

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 56
  • Total Committers: 3
  • Avg Commits per committer: 18.667
  • Development Distribution Score (DDS): 0.554
Past Year
  • Commits: 34
  • Committers: 3
  • Avg Commits per committer: 11.333
  • Development Distribution Score (DDS): 0.265
Top Committers
Name Email Commits
Thomas Debray 1****3 25
Thomas Debray m****l@t****e 19
Thomas Debray t****y@T****l 12
Committer Domains (Top 20 + Academic)
thomasdebray.be: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 3
  • Total pull requests: 4
  • Average time to close issues: about 20 hours
  • Average time to close pull requests: 1 day
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.33
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • NightlordTW (3)
Pull Request Authors
  • VMTdeJong (7)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 579 last-month
  • Total docker downloads: 43,390
  • Total dependent packages: 0
  • Total dependent repositories: 2
  • Total versions: 19
  • Total maintainers: 1
cran.r-project.org: metamisc

Meta-Analysis of Diagnosis and Prognosis Research Studies

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 579 Last month
  • Docker Downloads: 43,390
Rankings
Docker downloads count: 0.6%
Downloads: 16.2%
Dependent repos count: 19.3%
Average: 20.6%
Forks count: 27.8%
Dependent packages count: 28.8%
Stargazers count: 30.9%
Maintainers (1)
thomas.debray@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • graphics * depends
  • stats * depends
  • dplyr * imports
  • ggplot2 * imports
  • lme4 * imports
  • metafor >= 2.0.0 imports
  • methods * imports
  • mvtnorm * imports
  • pROC * imports
  • plyr * imports
  • coda * suggests
  • ggmcmc * suggests
  • logistf >= 1.23 suggests
  • rjags * suggests
  • runjags * suggests
  • testthat >= 1.0.2 suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/check-standard.yml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite