SPLINTER
SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic links in README
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✓Committers with academic emails
1 of 10 committers (10.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.3%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
genomics
gene
mass-spectrometry
single-cell-rna-seq
human-cell-atlas
core-package
microbiome
single-cell
proteomics
Last synced: 10 months ago
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JSON representation
Repository
SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.
Basic Info
- Host: GitHub
- Owner: dianalow
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/SPLINTER
- Size: 970 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 8 years ago
· Last pushed over 2 years ago
Owner
- Name: Diana Low
- Login: dianalow
- Kind: user
- Location: Singapore
- Repositories: 51
- Profile: https://github.com/dianalow
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Diana Low | l****a@g****m | 14 |
| Diana HP Low | d****l@b****g | 12 |
| Hervé Pagès | h****s@f****g | 6 |
| Herve Pages | h****s@f****g | 4 |
| Nitesh Turaga | n****a@g****m | 4 |
| Diana Low | d****w@d****l | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Martin Morgan | m****n@f****g | 1 |
| Kayla-Morrell | k****l@r****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 1
- Total pull requests: 1
- Average time to close issues: over 3 years
- Average time to close pull requests: 7 days
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 5.0
- Average comments per pull request: 2.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- eric-d-larson (1)
Pull Request Authors
- hpages (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 14,354 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: SPLINTER
Splice Interpreter of Transcripts
- Homepage: https://github.com/dianalow/SPLINTER/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/SPLINTER/inst/doc/SPLINTER.pdf
- License: GPL-2
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Latest release: 1.34.0
published about 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Forks count: 19.8%
Average: 21.6%
Stargazers count: 33.2%
Downloads: 54.9%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.6.0 depends
- grDevices * depends
- stats * depends
- BSgenome.Mmusculus.UCSC.mm9 * imports
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicAlignments * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- Gviz * imports
- IRanges * imports
- S4Vectors * imports
- biomaRt * imports
- ggplot2 * imports
- googleVis * imports
- graphics * imports
- methods * imports
- plyr * imports
- seqLogo * imports
- stringr * imports
- utils * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests