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moveHMM

R package - Animal movement modelling using hidden Markov models

https://github.com/theomichelot/movehmm

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 8 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.8%) to scientific vocabulary

Keywords

animal-movement hidden-markov-model hmm movement-ecology r-package
Last synced: 7 months ago · JSON representation

Repository

R package - Animal movement modelling using hidden Markov models

Basic Info
Statistics
  • Stars: 43
  • Watchers: 9
  • Forks: 15
  • Open Issues: 0
  • Releases: 8
Topics
animal-movement hidden-markov-model hmm movement-ecology r-package
Created over 10 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog

README.md

moveHMM CRAN_Status_Badge License: GPL v3 Downloads

An R package for analysing animal movement with hidden Markov models.

Get started with the vignettes:

Installation instructions

Stable release

The package is available on CRAN. To install it from CRAN, you can use the following command: R install.packages("moveHMM")

Install from Github

To install the latest (unstable) version of the package from Github: R devtools::install_github("TheoMichelot/moveHMM", build_vignettes = TRUE)

References

Michelot, T., Langrock, R., Patterson, T.A. (2016). moveHMM: An R package for analysing animal movement data using hidden Markov models. Methods in Ecology and Evolution. 7(11), 1308-1315.

Langrock, R., King, R., Matthiopoulos, J., Thomas, L., Fortin, D., & Morales, J. M. (2012). Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. Ecology, 93(11), 2336-2342.

Patterson, T. A., Basson, M., Bravington, M. V., & Gunn, J. S. (2009). Classifying movement behaviour in relation to environmental conditions using hidden Markov models. Journal of Animal Ecology, 78(6), 1113-1123.

Owner

  • Name: Théo Michelot
  • Login: TheoMichelot
  • Kind: user
  • Location: Halifax
  • Company: Dalhousie University

Assistant professor in statistics at Dalhousie University, Halifax, Canada

GitHub Events

Total
  • Issues event: 2
  • Watch event: 5
  • Issue comment event: 6
  • Push event: 4
  • Fork event: 3
Last Year
  • Issues event: 2
  • Watch event: 5
  • Issue comment event: 6
  • Push event: 4
  • Fork event: 3

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 667
  • Total Committers: 8
  • Avg Commits per committer: 83.375
  • Development Distribution Score (DDS): 0.336
Past Year
  • Commits: 10
  • Committers: 1
  • Avg Commits per committer: 10.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
TheoMichelot t****t@g****m 443
TheoMichelot t****t@i****r 136
Théo Michelot t****5@s****k 63
RolandLangrock r****3@s****k 10
brettmcclintock b****k@n****v 8
Max Czapanskiy m****p@s****u 4
Justin Shenk s****n@g****m 2
Alec L. Robitaille r****c@g****m 1
Committer Domains (Top 20 + Academic)
st-andrews.ac.uk: 2 stanford.edu: 1 noaa.gov: 1 insa-rouen.fr: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 24
  • Total pull requests: 11
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 3 days
  • Total issue authors: 19
  • Total pull request authors: 4
  • Average comments per issue: 3.29
  • Average comments per pull request: 0.36
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 2.67
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • bniebuhr (3)
  • FlukeAndFeather (3)
  • RoryMMMM (2)
  • windstorm13 (1)
  • scra88le (1)
  • DanaKarelus (1)
  • jojanzing (1)
  • JWhiteWildlife (1)
  • LucyJMitchell (1)
  • MarkJThomas (1)
  • milliff (1)
  • anjankatna (1)
  • ToriAlma (1)
  • star96 (1)
  • eduardszoecs (1)
Pull Request Authors
  • bmcclintock (7)
  • FlukeAndFeather (2)
  • robitalec (1)
  • JustinShenk (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 1,221 last-month
  • Total docker downloads: 21,777
  • Total dependent packages: 7
  • Total dependent repositories: 7
  • Total versions: 12
  • Total maintainers: 1
cran.r-project.org: moveHMM

Animal Movement Modelling using Hidden Markov Models

  • Versions: 12
  • Dependent Packages: 7
  • Dependent Repositories: 7
  • Downloads: 1,221 Last month
  • Docker Downloads: 21,777
Rankings
Forks count: 6.3%
Dependent packages count: 6.6%
Stargazers count: 9.2%
Average: 9.9%
Dependent repos count: 11.1%
Docker downloads count: 12.6%
Downloads: 13.6%
Maintainers (1)
theo.michelot@dal.ca
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • CircStats * depends
  • MASS * imports
  • Rcpp * imports
  • boot * imports
  • geosphere * imports
  • ggmap * imports
  • ggplot2 * imports
  • numDeriv * imports
  • sp * imports
  • knitr * suggests
  • testthat * suggests