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parmigene

Parallel Mutual Information estimation for Gene Network reconstruction

https://github.com/sales-lab/parmigene

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Parallel Mutual Information estimation for Gene Network reconstruction

Basic Info
  • Host: GitHub
  • Owner: sales-lab
  • License: agpl-3.0
  • Language: C
  • Default Branch: master
  • Size: 43 KB
Statistics
  • Stars: 6
  • Watchers: 1
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created almost 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

parmigene

R-CMD-check <!-- badges: end -->

This R package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.

Find more details in the paper:

Gabriele Sales, Chiara Romualdi, parmigene—a parallel R package for mutual information estimation and gene network reconstruction, Bioinformatics, Volume 27, Issue 13, 1 July 2011, Pages 1876–1877, https://doi.org/10.1093/bioinformatics/btr274

Owner

  • Name: Sales Lab
  • Login: sales-lab
  • Kind: organization

GitHub Events

Total
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 10
  • Create event: 1
Last Year
  • Issues event: 1
  • Watch event: 1
  • Issue comment event: 2
  • Push event: 10
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 10
  • Total Committers: 1
  • Avg Commits per committer: 10.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Gabriele Sales g****s@g****m 10

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 2
  • Total pull requests: 1
  • Average time to close issues: about 1 year
  • Average time to close pull requests: 34 minutes
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • handesome (1)
  • mjrmason (1)
Pull Request Authors
  • gbrsales (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 517 last-month
  • Total docker downloads: 284
  • Total dependent packages: 4
    (may contain duplicates)
  • Total dependent repositories: 15
    (may contain duplicates)
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: parmigene

Parallel Mutual Information Estimation for Gene Network Reconstruction

  • Versions: 5
  • Dependent Packages: 4
  • Dependent Repositories: 15
  • Downloads: 517 Last month
  • Docker Downloads: 284
Rankings
Dependent repos count: 7.4%
Dependent packages count: 9.3%
Average: 16.8%
Docker downloads count: 17.1%
Forks count: 21.0%
Stargazers count: 22.0%
Downloads: 24.1%
Maintainers (1)
gabriele.sales@unipd.it
Last synced: 11 months ago
conda-forge.org: r-parmigene
  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Average: 49.9%
Dependent packages count: 51.2%
Stargazers count: 57.0%
Forks count: 57.4%
Last synced: 10 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran