reReg

Regression methods for recurrent event data

https://github.com/stc04003/rereg

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
1 of 5 committers (20.0%) from academic institutions
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Scientific vocabulary similarity
Low similarity (17.5%) to scientific vocabulary

Keywords

r-package

Keywords from Contributors

mcf mean-cumulative-function recurrent-event survival-analysis

Last synced: 10 months ago · JSON representation

Repository

Regression methods for recurrent event data

Basic Info

Host: GitHub
Owner: stc04003
Language: HTML
Default Branch: main
Homepage: https://www.sychiou.com/reReg/index.html
Size: 89.3 MB

Statistics

Stars: 23
Watchers: 3
Forks: 5
Open Issues: 3
Releases: 0

Topics

r-package

Created about 8 years ago · Last pushed 12 months ago

Metadata Files

Readme Changelog

README.Rmd

---
output: github_document
---

## **reReg**

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.4.0-6666ff.svg)](https://cran.r-project.org/)
[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/reReg)](https://cran.r-project.org/package=reReg)
[![packageversion](https://img.shields.io/badge/Package%20version-1.4.4-orange.svg?style=flat-square)](commits/master)
[![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/stc04003/reReg?branch=master&svg=true)](https://ci.appveyor.com/project/stc04003/reReg)
[![Travis-CI Build Status](https://travis-ci.org/stc04003/reReg.svg?branch=master)](https://travis-ci.org/stc04003/reReg)
[![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](/commits/master)



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

### Regression models for recurrent event data
***reReg*** implements a collection of regression models for recurrent event process and failure time.
The package is still under active development.

### Installation

You can install and load **reReg** from CRAN using

```{r cran-installation, eval = FALSE}
install.packages("reReg")
library(reReg)
```

You can install reReg from github with:

```{r gh-installation, eval = FALSE}
## install.packages("devtools")
devtools::install_github("stc04003/reReg", ref = "main")
```

### Citation
Cite ***reReg*** with `citation("reReg")`.
```{R}
citation("reReg")
```

### Online documentation 
[Online document](https://www.sychiou.com/reReg/index.html) includes:

* Package vignette on [Creating `Recur` objects](https://www.sychiou.com/reReg/articles/reReg-Recur.html).
* Package vignette on [visualization of recurrent event data](https://www.sychiou.com/reReg/articles/reReg-plot.html).
* Package vignette on [simulating recurrent event data](https://www.sychiou.com/reReg/articles/reReg-sims.html).
* Package vignette on [regression analysis for recurrent event data](https://www.sychiou.com/reReg/articles/reReg-reg.html).
* Package vignette on [improving semiparametric estimation of the Cox-type proportional rate model](https://www.sychiou.com/reReg/articles/reReg-cppl.html).


### References:

   Lin, D., Wei, L., Yang, I. and Ying, Z. (2000). Semiparametric
   Regression for the Mean and Rate Functions of Recurrent Events.
   *Journal of the Royal Statistical Society: Series B
   (Methodological)*, **62**: 711-730.

   Wang, M.-C., Qin, J., and Chiang, C.-T. (2001). Analyzing Recurrent
   Event Data with Informative Censoring. *Journal of the American
   Statistical Association* **96**(455): 1057-1065.

   Ghosh, D. and D.Y. Lin (2002). Marginal Regression Models for Recurrent and Terminal Events. 
  *Statistica Sinica*, 663-688.
  
   Ghosh, D. and D.Y. Lin (2003). Semiparametric Analysis of
   Recurrent Events Data in the Presence of Dependent Censoring.
   *Biometrics*, **59**: 877-885.

   Huang, C.-Y. and Wang, M.-C. (2004). Joint Modeling and Estimation
   for Recurrent Event Processes and Failure Time Data. *Journal of
   the American Statistical Association* **99**(468), 1153-1165.

   Xu, G., Chiou, S.H., Huang, C.-Y., Wang, M.-C. and Yan, J. (2017).
   Joint Scale-change Models for Recurrent Events and Failure Time.
   *Journal of the American Statistical Association* **112**(518):
   796-805.

   Xu, G., Chiou, S.H., Yan, J., Marr, K., and Huang, C.-Y. (2020)
   Generalized Scale-Change Models for Recurrent Event Processes under Informative Censoring. 
   *Statistica Sinica* **30**, 1773--1795.
  
   Huang, M.-Y. and Huang, C.Y. (2022)
   Improved semiparametric estimation of the proportional rate model with recurrent event data. 
   *Biometrics* **79(3)**, 1686--1700. 
   
   Chiou, S.H., Xu, G., Yan, J. and Huang, C.-Y. (2022)
   Regression modeling for recurrent events possibly with an informative terminal event using `R` package `reReg`.
   *Journal of Statistical Software* **105**, 1--34.

Owner

Name: Steven Chiou
Login: stc04003
Kind: user
Location: Dallas, TX
Company: The University of Texas at Dallas

Website: www.sychiou.com
Repositories: 6
Profile: https://github.com/stc04003

Assistant Professor

GitHub Events

Total

Issues event: 1
Watch event: 4
Issue comment event: 2
Push event: 2
Create event: 1

Last Year

Issues event: 1
Watch event: 4
Issue comment event: 2
Push event: 2
Create event: 1

Committers

Last synced: over 2 years ago

All Time

Total Commits: 410
Total Committers: 5
Avg Commits per committer: 82.0
Development Distribution Score (DDS): 0.346

Past Year

Commits: 7
Committers: 2
Avg Commits per committer: 3.5
Development Distribution Score (DDS): 0.286

Top Committers

Name	Email	Commits
Steven Chiou	s**u@g**m	268
Steven Chiou	s**u@u**u	136
Wenjie Wang	w**g@w**g	3
bettinagruen	3****n	2
Wenjie Wang	w**t@g**m	1

Committer Domains (Top 20 + Academic)

wwenjie.org: 1 utdallas.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time

Total issues: 17
Total pull requests: 16
Average time to close issues: 4 months
Average time to close pull requests: about 2 hours
Total issue authors: 14
Total pull request authors: 3
Average comments per issue: 1.41
Average comments per pull request: 0.25
Merged pull requests: 13
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 2.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

jun-yan (3)
wenjie2wang (2)
tdhock (1)
muschellij2 (1)
carbocation (1)
mafed (1)
adrianvallsc (1)
kmc8c3 (1)
ramseywehbe (1)
patrickheindel (1)
csthiago (1)
bcs4007 (1)
lucysea (1)
Generalized (1)

Pull Request Authors

stc04003 (11)
wenjie2wang (3)
bettinagruen (2)

Top Labels

Issue Labels

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Packages

Total packages: 1
Total downloads:
- cran 512 last-month
Total docker downloads: 21,777

Total dependent packages: 1
Total dependent repositories: 1
Total versions: 19
Total maintainers: 1

cran.r-project.org: reReg

Recurrent Event Regression

Homepage: https://github.com/stc04003/reReg
Documentation: http://cran.r-project.org/web/packages/reReg/reReg.pdf
License: GPL (≥ 3)
Latest release: 1.4.7
published almost 2 years ago

Versions: 19
Dependent Packages: 1
Dependent Repositories: 1
Downloads: 512 Last month
Docker Downloads: 21,777

Rankings

Stargazers count: 12.2%

Forks count: 12.2%

Docker downloads count: 12.6%

Average: 17.0%

Dependent packages count: 18.1%

Downloads: 23.2%

Dependent repos count: 23.9%

Maintainers (1)

schiou@smu.edu

Last synced: 11 months ago

Dependencies

DESCRIPTION cran

R >= 4.2.0 depends
BB * imports
MASS * imports
Rcpp * imports
SQUAREM * imports
dfoptim * imports
directlabels * imports
ggplot2 * imports
methods * imports
nleqslv * imports
optimx * imports
reda >= 0.5.0 imports
rootSolve * imports
scam * imports
survival * imports

ecosyste.ms

Data

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Indexes

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Experiments

Open Source Science

reReg

Science Score: 23.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.Rmd

Owner

GitHub Events

Total

Last Year

Committers

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Past Year

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Committer Domains (Top 20 + Academic)

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Packages

cran.r-project.org: reReg

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Maintainers (1)

Dependencies