momentuHMM
Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models
Science Score: 59.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 6 DOI reference(s) in README -
✓Academic publication links
Links to: springer.com -
✓Committers with academic emails
1 of 4 committers (25.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.2%) to scientific vocabulary
Keywords
Repository
Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models
Basic Info
Statistics
- Stars: 47
- Watchers: 8
- Forks: 19
- Open Issues: 1
- Releases: 18
Topics
Metadata Files
README.md
momentuHMM 
R package for Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models
Get started with the vignette: Guide to using momentuHMM
Installation instructions
CRAN release
The package is available at . To install it:
R
install.packages("momentuHMM")
Install from Github
To install the latest (stable) version of the package from Github:
R
library(remotes)
install_github("bmcclintock/momentuHMM")
To install the latest (unstable) version of the package from Github: 
R
library(remotes)
install_github("bmcclintock/momentuHMM@develop")
References
McClintock, B.T., Michelot, T. (2018) momentuHMM: R package for generalized hidden Markov models of animal movement. Methods in Ecology and Evolution, 9(6), 1518-1530.
McClintock, B.T., King R., Thomas L., Matthiopoulos J., McConnell B.J., Morales J.M. (2012) A general discrete-time modeling framework for animal movement using multistate random walks. Ecological Monographs, 82(3), 335-349.
McClintock, B.T. (2017) Incorporating telemetry error into hidden Markov models of animal movement using multiple imputation. Journal of Agricultural, Biological, and Environmental Statistics, 22(3), 249-269.
Owner
- Name: Brett McClintock
- Login: bmcclintock
- Kind: user
- Twitter: bt_mcclintock
- Repositories: 4
- Profile: https://github.com/bmcclintock
GitHub Events
Total
- Issues event: 1
- Watch event: 3
- Issue comment event: 2
- Push event: 15
Last Year
- Issues event: 1
- Watch event: 3
- Issue comment event: 2
- Push event: 15
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| brettmcclintock | b****k@n****v | 1,194 |
| bmcclintock | b****k@g****m | 60 |
| TheoMichelot | t****t@g****m | 49 |
| bmcclintock | b****k | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 60
- Total pull requests: 17
- Average time to close issues: about 1 month
- Average time to close pull requests: 7 days
- Total issue authors: 45
- Total pull request authors: 2
- Average comments per issue: 1.87
- Average comments per pull request: 0.35
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 1
- Average time to close issues: 1 day
- Average time to close pull requests: 17 days
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 0.5
- Average comments per pull request: 1.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Dekike (4)
- willpkay (3)
- xjtusjtu (3)
- DEHewitt (2)
- virginiaIorio (2)
- sarahchinn (2)
- rociojoo (2)
- dantzert (2)
- windstorm13 (2)
- riccile (2)
- echelleburns (1)
- Zehidul-wii (1)
- anylital (1)
- mebowers5 (1)
- eunjng (1)
Pull Request Authors
- TheoMichelot (17)
- JoshOBrien (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 773 last-month
- Total dependent packages: 0
- Total dependent repositories: 2
- Total versions: 17
- Total maintainers: 1
cran.r-project.org: momentuHMM
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
- Homepage: https://github.com/bmcclintock/momentuHMM
- Documentation: http://cran.r-project.org/web/packages/momentuHMM/momentuHMM.pdf
- License: GPL-3
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Latest release: 1.5.6
published 8 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.10 depends
- Brobdingnag * imports
- CircStats * imports
- MASS * imports
- Rcpp * imports
- crawl >= 2.2.1 imports
- doParallel * imports
- doRNG * imports
- foreach * imports
- mvtnorm * imports
- numDeriv * imports
- rlang * imports
- sp * imports
- BB * suggests
- R.rsp * suggests
- car * suggests
- conicfit * suggests
- data.tree >= 1.0.0 suggests
- doFuture * suggests
- dplyr * suggests
- expm * suggests
- extraDistr * suggests
- future * suggests
- geosphere * suggests
- ggmap * suggests
- ggplot2 * suggests
- lubridate * suggests
- magrittr * suggests
- matrixcalc * suggests
- mitools * suggests
- moveHMM * suggests
- nleqslv * suggests
- prodlim * suggests
- qdapRegex * suggests
- raster * suggests
- scatterplot3d * suggests
- setRNG * suggests
- splines * suggests
- splines2 >= 0.2.8 suggests
- survival * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite