helminthR
Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.
Science Score: 59.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: wiley.com -
✓Committers with academic emails
3 of 9 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.
Basic Info
- Host: GitHub
- Owner: ropensci
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://docs.ropensci.org/helminthR
- Size: 647 KB
Statistics
- Stars: 9
- Watchers: 4
- Forks: 5
- Open Issues: 0
- Releases: 5
Topics
Metadata Files
README.md
helminthR
Provides access the London Natural History Museum's helminth database. The data are now archived by the London Natural History Museum, but we are still curating the data, adding records and working towards georeferencing existing data at a finer scale than the current geopolitical level.
This package has changed a good deal as a result of the data being archived. See the original software note in Ecography (available here) for information on how the package worked in the past, or see the vignette for how it works now.
Installation
From GitHub
# install.packages("devtools")
devtools::install_github("rOpenSci/helminthR")
library("helminthR")
Load the data
``` dat <- loadData()
```
Contribute!
Feel free to fork it and contribute some functionality.
Meta
- Please report any issues or bugs.
- License: GPL-3
- Get citation information for
helminthRin R doingcitation(package = 'helminthR') - Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.
Owner
- Name: rOpenSci
- Login: ropensci
- Kind: organization
- Email: info@ropensci.org
- Location: Berkeley, CA
- Website: https://ropensci.org/
- Twitter: rOpenSci
- Repositories: 307
- Profile: https://github.com/ropensci
GitHub Events
Total
- Issues event: 2
- Issue comment event: 2
- Push event: 5
Last Year
- Issues event: 2
- Issue comment event: 2
- Push event: 5
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| taddallas | t****s@u****u | 72 |
| taddallas | t****s@u****u | 21 |
| taddallas | t****s@g****m | 4 |
| Karthik Ram | k****m@g****m | 4 |
| rOpenSci Bot | m****t@g****m | 1 |
| Hadley Wickham | h****m@g****m | 1 |
| steven2249 | s****w@b****u | 1 |
| Scott Chamberlain | m****s@g****m | 1 |
| Maëlle Salmon | m****n@y****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 8
- Total pull requests: 17
- Average time to close issues: 3 months
- Average time to close pull requests: 1 day
- Total issue authors: 5
- Total pull request authors: 7
- Average comments per issue: 5.5
- Average comments per pull request: 0.76
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- sckott (3)
- taddallas (2)
- maelle (1)
- cjcarlson (1)
- karthik (1)
Pull Request Authors
- taddallas (9)
- karthik (3)
- maelle (1)
- talpazi (1)
- arw36 (1)
- hadley (1)
- sckott (1)
- stevenysw (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 3
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Total downloads:
- cran 267 last-month
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Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 0
(may contain duplicates) - Total versions: 14
- Total maintainers: 1
proxy.golang.org: github.com/ropensci/helminthr
- Documentation: https://pkg.go.dev/github.com/ropensci/helminthr#section-documentation
- License: gpl-3.0
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Latest release: v1.1.0
published 8 months ago
Rankings
proxy.golang.org: github.com/ropensci/helminthR
- Documentation: https://pkg.go.dev/github.com/ropensci/helminthR#section-documentation
- License: gpl-3.0
-
Latest release: v1.1.0
published 8 months ago
Rankings
cran.r-project.org: helminthR
Access London Natural History Museum Host-Helminth Record Database
- Homepage: https://docs.ropensci.org/helminthR/
- Documentation: http://cran.r-project.org/web/packages/helminthR/helminthR.pdf
- License: GPL-3
- Status: removed
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Latest release: 1.0.10
published about 3 years ago
Rankings
Maintainers (1)
Dependencies
- httr * imports
- magrittr * imports
- plyr * imports
- rvest * imports
- taxize * imports
- utils * imports
- xml2 * imports
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite