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Morpho

R-package providing a toolset for (3D-based) Geometric Morphometrics

https://github.com/zarquon42b/morpho

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 12 committers (8.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R-package providing a toolset for (3D-based) Geometric Morphometrics

Basic Info
  • Host: GitHub
  • Owner: zarquon42b
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 11.6 MB
Statistics
  • Stars: 52
  • Watchers: 8
  • Forks: 18
  • Open Issues: 9
  • Releases: 9
Created almost 13 years ago · Last pushed 11 months ago
Metadata Files
Readme

README.md

Morpho Unit Tests License Downloads

Morpho provides a rich toolset for Geometric Morphometrics and mesh processing in R. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks, im- and export of a variety of triangular surface mesh files.

Installation of the R-package Morpho from CRAN:

Prerequisites for Debian/Ubuntu (needed to build dependency package sf)

sudo apt install libudunits2-dev libgeos-dev

Prerequisites for Fedora (needed to build dependency package sf)

dnf install udunits2-devel geos-devel gdal-devel proj-devel

Within R:

install.packages("Morpho")

Installation of the R-package Morpho (development snapshot) using devtools:

Install prerequisites

  1. Install devtools from within R (Ubuntu/Debian users will have to install libcurl4-gnutls-dev beforehand):

    install.packages("devtools")

    Make sure to have the latest versions of Rcpp and RcppArmadillo installed!!

  2. Install build environment

    • Windows: Install latest version of Rtools During installation of Rtools make sure to install the toolchain, and to select "Edit the system path" (and confirming the installers suggestions).
    • OSX: Install XCODE

  3. Install prerequisites for Debian/Ubuntu (needed to build dependency package sf)

sudo apt install libudunits2-dev libgeos-dev

Install Morpho

Run the following command in R:

require(devtools)
install_github("zarquon42b/Morpho")

Owner

  • Name: Stefan Schlager
  • Login: zarquon42b
  • Kind: user

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 15
  • Pull request event: 10
  • Fork event: 1
Last Year
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 15
  • Pull request event: 10
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 1,630
  • Total Committers: 12
  • Avg Commits per committer: 135.833
  • Development Distribution Score (DDS): 0.128
Past Year
  • Commits: 10
  • Committers: 3
  • Avg Commits per committer: 3.333
  • Development Distribution Score (DDS): 0.2
Top Committers
Name Email Commits
schlager z****2@g****m 1,422
schlager s****r@a****) 114
zarquon42b z****b@u****t 58
Gregory Jefferis j****s@g****m 13
zarquon42b s****r@u****n 8
zarquon42b s****r@s****) 6
zarquon42b s****k@o****e 3
Duncan Murdoch m****n@g****m 2
J. David Aponte d****8@g****m 1
stla l****p@y****r 1
nevrome c****s@n****e 1
schlager s****r@A****) 1
Committer Domains (Top 20 + Academic)
anthro-precision-m4600.(none): 1 nevrome.de: 1 online.de: 1 schlager-laptop.(none): 1 ubuntu.ubuntu-domain: 1 users.sourceforge.net: 1 anthro-hp-1.(none): 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 31
  • Total pull requests: 9
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 1 day
  • Total issue authors: 25
  • Total pull request authors: 6
  • Average comments per issue: 2.71
  • Average comments per pull request: 1.56
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 6 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jefferis (2)
  • zarquon42b (2)
  • Ruiqi-CUB (2)
  • mcranium (2)
  • J0vid (2)
  • daskandalis (2)
  • nevrome (1)
  • StevenVB12 (1)
  • chris-english (1)
  • dckatz (1)
  • mwyatt272 (1)
  • jkh1 (1)
  • mgrewe (1)
  • klamalfa (1)
  • rdinnager (1)
Pull Request Authors
  • mcranium (5)
  • dmurdoch (3)
  • jefferis (2)
  • nevrome (1)
  • muratmaga (1)
  • J0vid (1)
  • stla (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 1,073 last-month
  • Total docker downloads: 21,777
  • Total dependent packages: 15
  • Total dependent repositories: 44
  • Total versions: 26
  • Total maintainers: 1
cran.r-project.org: Morpho

Calculations and Visualisations Related to Geometric Morphometrics

  • Versions: 26
  • Dependent Packages: 15
  • Dependent Repositories: 44
  • Downloads: 1,073 Last month
  • Docker Downloads: 21,777
Rankings
Dependent repos count: 3.8%
Dependent packages count: 4.3%
Forks count: 4.6%
Stargazers count: 7.0%
Average: 7.3%
Downloads: 11.9%
Docker downloads count: 12.5%
Maintainers (1)
zarquon42@gmail.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.2.0 depends
  • MASS * imports
  • Matrix >= 1.0 imports
  • Rcpp * imports
  • Rvcg >= 0.7 imports
  • bezier * imports
  • colorRamps * imports
  • doParallel >= 1.0.6 imports
  • foreach >= 1.4.0 imports
  • grDevices * imports
  • graphics * imports
  • jsonlite * imports
  • methods * imports
  • parallel * imports
  • rgl >= 0.100.18 imports
  • sf * imports
  • stats * imports
  • utils * imports
  • car * suggests
  • lattice * suggests
  • shapes * suggests
  • testthat * suggests