MOSS

MOSS: Multi-Omic integration via Sparse Singular Decomposition

https://github.com/agugonrey/moss

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
    Found 1 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (8.1%) to scientific vocabulary

Keywords

elastic-net multi-omic-integration r-package sparse-singular-value-decomposition variable-selection
Last synced: 6 months ago · JSON representation

Repository

MOSS: Multi-Omic integration via Sparse Singular Decomposition

Basic Info
  • Host: GitHub
  • Owner: agugonrey
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 10.3 MB
Statistics
  • Stars: 7
  • Watchers: 3
  • Forks: 3
  • Open Issues: 0
  • Releases: 0
Topics
elastic-net multi-omic-integration r-package sparse-singular-value-decomposition variable-selection
Created over 5 years ago · Last pushed about 2 years ago
Metadata Files
Readme Contributing

README.md

MOSS: Multi-omic integration via sparse singular value decomposition.

CRAN status Travis-CI Build Status CRAN checks Downloads Downloads

Agustin Gonzalez-Reymundez, Alexander Grueneberg, and Ana I. Vazquez.

Installing and loading MOSS from CRAN.

install.packages("MOSS") library("MOSS")

Installing and loading MOSS from GitHub.

if (require("remotes") == FALSE) install.packages("remotes") install_github("agugonrey/MOSS") library("MOSS")

Article

MOSS: Multi-omic integration with Sparse Value Decomposition

Documentation.

For a description of the package's main function.

help(moss)

For more documentation, see:

supplementary information for Gonzalez-Reymundez et al (2022)

and

vignette.

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 134
  • Total Committers: 3
  • Avg Commits per committer: 44.667
  • Development Distribution Score (DDS): 0.306
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
agugonrey a****y@g****m 93
agugonrey 6****y 21
Alexander Grueneberg g****t@a****o 20
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 10
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.3
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
  • agrueneberg (10)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 692 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
cran.r-project.org: MOSS

Multi-Omic Integration via Sparse Singular Value Decomposition

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 692 Last month
  • Docker Downloads: 21,613
Rankings
Forks count: 14.9%
Stargazers count: 24.2%
Average: 28.1%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Downloads: 36.1%
Maintainers (1)
Last synced: about 1 year ago

Dependencies

DESCRIPTION cran
  • Rtsne * imports
  • cluster * imports
  • dbscan * imports
  • stats * imports
  • ComplexHeatmap * suggests
  • MASS * suggests
  • VennDiagram * suggests
  • annotate * suggests
  • bigparallelr * suggests
  • bigstatsr * suggests
  • clValid * suggests
  • fpc * suggests
  • future.apply * suggests
  • ggplot2 * suggests
  • ggpmisc * suggests
  • ggthemes * suggests
  • grid * suggests
  • gridExtra * suggests
  • irlba * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • scatterpie * suggests
  • spelling * suggests
  • testthat * suggests
  • viridis * suggests