Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 9 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.8%) to scientific vocabulary
Repository
Model selection and stability plots
Basic Info
- Host: GitHub
- Owner: garthtarr
- Language: R
- Default Branch: master
- Homepage: http://garthtarr.github.io/mplot
- Size: 17.7 MB
Statistics
- Stars: 12
- Watchers: 4
- Forks: 7
- Open Issues: 8
- Releases: 0
Metadata Files
README.md
mplot: graphical model stability and variable selection procedures
The mplot package provides a collection of functions designed for exploratory model selection.
We implement model stability and variable importance plots (Mueller and Welsh (2010); Murray, Heritier and Mueller (2013)) as well as the adaptive fence (Jiang et al. (2008); Jiang et al. (2009)) for linear and generalised linear models. We address many practical implementation issues with sensible defaults and interactive graphics to highlight model selection stability. The speed of implementation comes from the leaps package and multicore support for bootstrapping.
The mplot currently only supports linear and generalised linear models, however work is progressing to incorporate survival models and mixed models.
You can see an example of the output here.
Installation
Check that you're running the most recent versions of your currently installed R packages:
s
update.packages()
Stable release on CRAN
The mplot package has been on CRAN since June 2015. You can install it from CRAN in the usual way:
s
install.packages("mplot")
library("mplot")
Development version on Github
You can use the devtools package to install the development version of mplot from GitHub:
```s
install.packages("devtools")
devtools::install_github("garthtarr/mplot") library(mplot) ```
Usage
A reference manual is available at garthtarr.github.io/mplot
Citation
If you use this package to inform your model selection choices, please use the following citation:
- Tarr G, Müller S and Welsh AH (2018). "mplot: An R Package for Graphical Model Stability and Variable Selection Procedures." Journal of Statistical Software, 83(9), pp. 1–28. doi: 10.18637/jss.v083.i09.
From R you can use:
s
citation("mplot")
toBibtex(citation("mplot"))
Owner
- Name: Garth Tarr
- Login: garthtarr
- Kind: user
- Location: Australia
- Company: University of Sydney
- Website: http://garthtarr.com
- Twitter: garthtarr
- Repositories: 60
- Profile: https://github.com/garthtarr
GitHub Events
Total
- Issues event: 2
- Watch event: 1
- Issue comment event: 1
Last Year
- Issues event: 2
- Watch event: 1
- Issue comment event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Garth Tarr | g****r@g****m | 226 |
| Garth Tarr | g****r@v****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 8
- Total pull requests: 0
- Average time to close issues: about 10 hours
- Average time to close pull requests: N/A
- Total issue authors: 5
- Total pull request authors: 0
- Average comments per issue: 0.63
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- garthtarr (3)
- cmatKhan (2)
- jlhanson5 (1)
- cwy20030 (1)
- ewamiti (1)
- mdozmorov (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 399 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 14
- Total maintainers: 1
cran.r-project.org: mplot
Graphical Model Stability and Variable Selection Procedures
- Homepage: https://garthtarr.github.io/mplot/
- Documentation: http://cran.r-project.org/web/packages/mplot/mplot.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 1.0.6
published about 5 years ago
Rankings
Maintainers (1)
Dependencies
- bestglm * imports
- doParallel * imports
- doRNG * imports
- dplyr * imports
- foreach * imports
- ggplot2 * imports
- glmnet * imports
- googleVis * imports
- graphics * imports
- leaps * imports
- magrittr * imports
- parallel * imports
- plyr * imports
- reshape2 * imports
- scales * imports
- shiny * imports
- shinydashboard * imports
- stats * imports
- tidyr * imports
- DT * suggests
- MASS * suggests
- glmulti * suggests
- knitr * suggests
- mvoutlier * suggests
- rmarkdown * suggests