Science Score: 46.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: arxiv.org -
✓Committers with academic emails
2 of 5 committers (40.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.1%) to scientific vocabulary
Keywords
Repository
R package for InSilicoVA framework
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
InSilicoVA
To install the package from CRAN, run the script:
r
install.packages("InSilicoVA")
To install the github testing version of InSilicoVA, run the script
r
library(devtools)
devtools::install_github("verbal-autopsy-software/InSilicoVA", subdir = "InSilicoVA")
To use InSilicoVA, 'rJava' package is required and it requires Java 6 or above properly installed and linked to R. See the user manual for more detail.
Reference
Tyler H. McCormick, Zehang Richard Li, Clara Calvert, Amelia C. Crampin, Kathleen Kahn, and Samuel J. Clark. Probabilistic Cause-of-death Assignment using Verbal Autopsies. Journal of the American Statistical Association 111.515 (2016): 1036-1049.
What's New
Additional information when running large models
If you hit the error message compaining about java heap size, e.g. java.lang.OutOfMemoryError: Java heap space
Try start a new R session and run this line of code before calling library(openVA) or library(InSilicoVA):
options(java.parameters = c("-XX:+UseConcMarkSweepGC"))
Owner
- Name: verbal-autopsy-software
- Login: verbal-autopsy-software
- Kind: organization
- Website: http://openva.net/
- Repositories: 21
- Profile: https://github.com/verbal-autopsy-software
Supported by the Bloomberg Philanthropies Data for Health Initiative, Vital Strategies and the National Institutes of Health
GitHub Events
Total
- Public event: 1
- Push event: 4
Last Year
- Public event: 1
- Push event: 4
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| richardli | l****g@g****m | 205 |
| Jason Thomas | j****s@g****m | 28 |
| Richard Li | l****g@u****u | 7 |
| Matt Boyas | m****s@m****g | 3 |
| A. Flaxman | a****e@a****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 29
- Total pull requests: 2
- Average time to close issues: 12 months
- Average time to close pull requests: 28 days
- Total issue authors: 4
- Total pull request authors: 2
- Average comments per issue: 0.45
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mjutras-mitre (20)
- jarathomas (5)
- richardli (2)
- sophiayc (2)
Pull Request Authors
- mboyas-mitre (1)
- aflaxman (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 480 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 24
- Total maintainers: 1
cran.r-project.org: InSilicoVA
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
- Homepage: https://github.com/verbal-autopsy-software/InSilicoVA
- Documentation: http://cran.r-project.org/web/packages/InSilicoVA/InSilicoVA.pdf
- License: GPL-2
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Latest release: 1.4.2
published 9 months ago
Rankings
Maintainers (1)
Dependencies
- InterVA5 * depends
- R >= 3.5.0 depends
- coda * depends
- ggplot2 * depends
- rJava * depends
- methods * imports
- testthat * suggests