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mgcViz

An R package for interactive visualization of GAM models

https://github.com/mfasiolo/mgcviz

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 6 committers (16.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

An R package for interactive visualization of GAM models

Basic Info
Statistics
  • Stars: 78
  • Watchers: 3
  • Forks: 12
  • Open Issues: 24
  • Releases: 0
Created about 9 years ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

CRAN_Status_Badge

mgcViz: visual tools for Generalized Additive Models

The mgcViz R package offers visual tools for Generalized Additive Models (GAMs). The visualizations provided by mgcViz differs from those implemented in mgcv, in that most of the plots are based on ggplot2's powerful layering system. This has been implemented by wrapping several ggplot2 layers and integrating them with computations specific to GAM models. Further, mgcViz uses binning and/or sub-sampling to produce plots that can scale to large datasets (n = O(10^7)), and offers a variety of new methods for visual model checking/selection.

See the vignette for an introduction to the following categories of visualizations:

  1. smooth and parametric effect plots: layered plots based on ggplot2 and interactive 3d visualizations based on the rgl library;

  2. model checks: interactive QQ-plots, traditional residuals plots and layered residuals checks along one or two covariates;

  3. special plots: differences-between-smooths plots in 1 or 2D and plotting multiple slices of multidimensional smooth effects.

Owner

  • Name: Matteo Fasiolo
  • Login: mfasiolo
  • Kind: user
  • Location: Bristol Uk
  • Company: University of Bristol

GitHub Events

Total
  • Issues event: 2
  • Watch event: 2
  • Issue comment event: 11
  • Push event: 5
  • Pull request event: 1
  • Fork event: 3
Last Year
  • Issues event: 2
  • Watch event: 2
  • Issue comment event: 11
  • Push event: 5
  • Pull request event: 1
  • Fork event: 3

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 379
  • Total Committers: 6
  • Avg Commits per committer: 63.167
  • Development Distribution Score (DDS): 0.216
Past Year
  • Commits: 8
  • Committers: 1
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Matteo Fasiolo m****o@g****m 297
Raphael Nedellec r****c@e****r 41
Raphael Nedellec r****c@g****m 20
Matteo Fasiolo m****2@i****k 15
ndevln g****b@n****g 5
NeoDevlin n****n@g****m 1
Committer Domains (Top 20 + Academic)
ndevln.org: 1 it031161.wks.bris.ac.uk: 1 edf.fr: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 71
  • Total pull requests: 11
  • Average time to close issues: 6 months
  • Average time to close pull requests: about 16 hours
  • Total issue authors: 15
  • Total pull request authors: 3
  • Average comments per issue: 1.48
  • Average comments per pull request: 1.0
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: 16 days
  • Average time to close pull requests: 2 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 9.0
  • Average comments per pull request: 2.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mfasiolo (49)
  • florianhartig (4)
  • fabian-s (4)
  • raphaelned (3)
  • rpomponio (1)
  • gimickwu (1)
  • wcornwell (1)
  • philippberens (1)
  • capezza (1)
  • madsurgeon (1)
  • gravems (1)
  • tmeeha (1)
  • abnormally-distributed (1)
  • dk-teknologisk-sven (1)
  • julovi (1)
Pull Request Authors
  • raphaelned (6)
  • ndevln (4)
  • teunbrand (2)
Top Labels
Issue Labels
enhancement (23) bug (3) help wanted (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 2,443 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 3
  • Total versions: 9
  • Total maintainers: 1
cran.r-project.org: mgcViz

Visualisations for Generalized Additive Models

  • Versions: 9
  • Dependent Packages: 1
  • Dependent Repositories: 3
  • Downloads: 2,443 Last month
Rankings
Stargazers count: 5.0%
Forks count: 7.3%
Downloads: 8.6%
Average: 11.1%
Dependent repos count: 16.5%
Dependent packages count: 18.1%
Maintainers (1)
matteo.fasiolo@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.4 depends
  • ggplot2 * depends
  • mgcv >= 1.8 depends
  • qgam >= 1.2.3 depends
  • GGally * imports
  • KernSmooth * imports
  • gamm4 * imports
  • gridExtra * imports
  • matrixStats * imports
  • miniUI * imports
  • plyr * imports
  • shiny * imports
  • viridis * imports
  • MASS * suggests
  • knitr * suggests
  • rgl * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • webshot2 * suggests
.github/workflows/check-standard.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite