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nadiv

R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model').

https://github.com/matthewwolak/nadiv

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model').

Basic Info
  • Host: GitHub
  • Owner: matthewwolak
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 2.43 MB
Statistics
  • Stars: 23
  • Watchers: 4
  • Forks: 7
  • Open Issues: 1
  • Releases: 11
Created about 11 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Changelog

README.md

nadiv

DOI

R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model'). Also includes other functions to facilitate the use of animal models. Some functions have been created to be used in conjunction with the R package for ASReml software.

See the latest developments:

Overview of main branches:

  • master branch is the most recent production version (typically the same as what is available from the R CRAN mirrors)

  • devel branch is a preview of the next release which should be functional and error/bug free, but proceed with caution

To obtain nadiv:

  • From R:

    • see the package page for the latest release of nadiv on CRAN where you can download the source.
    • install the latest release of the package directly in R: R install.packages("nadiv")
    • then select your favorite CRAN mirror

  • From GitHub:

    • clone or download the latest development version here
    • install the latest development version directly in R using the remotes package https://github.com/r-lib/remotes: R library(remotes); install_github("matthewwolak/nadiv", ref = "devel")

Owner

  • Name: Matthew
  • Login: matthewwolak
  • Kind: user
  • Location: Auburn, AL, USA
  • Company: Auburn University

GitHub Events

Total
  • Watch event: 5
Last Year
  • Watch event: 5

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 673
  • Total Committers: 1
  • Avg Commits per committer: 673.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 19
  • Committers: 1
  • Avg Commits per committer: 19.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
matthew m****k@g****m 673

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 8
  • Total pull requests: 29
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 8 minutes
  • Total issue authors: 6
  • Total pull request authors: 1
  • Average comments per issue: 3.25
  • Average comments per pull request: 0.0
  • Merged pull requests: 29
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • matthewwolak (3)
  • matthewberryman (1)
  • jhagberg (1)
  • sameerjoshi23 (1)
  • Ax3man (1)
Pull Request Authors
  • matthewwolak (31)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 878 last-month
  • Total dependent packages: 3
  • Total dependent repositories: 6
  • Total versions: 20
  • Total maintainers: 1
cran.r-project.org: nadiv

(Non)Additive Genetic Relatedness Matrices

  • Versions: 20
  • Dependent Packages: 3
  • Dependent Repositories: 6
  • Downloads: 878 Last month
Rankings
Forks count: 8.7%
Dependent packages count: 10.9%
Average: 11.7%
Dependent repos count: 11.9%
Stargazers count: 13.3%
Downloads: 13.5%
Maintainers (1)
matthewwolak@gmail.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • Matrix * depends
  • R >= 3.6.0 depends
  • MCMCglmm * enhances
  • asreml * enhances
  • graphics * imports
  • methods * imports
  • stats * imports
  • parallel * suggests