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neonUtilities

Utilities and scripts for working with NEON data. Currently: an R package with functions to join (stack) the month-by-site files in downloaded NEON data, to convert data to geoCSV format, and to download data from the API.

https://github.com/neonscience/neon-utilities

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
  • ○
    Committers with academic emails
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Utilities and scripts for working with NEON data. Currently: an R package with functions to join (stack) the month-by-site files in downloaded NEON data, to convert data to geoCSV format, and to download data from the API.

Basic Info
  • Host: GitHub
  • Owner: NEONScience
  • License: agpl-3.0
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 136 MB
Statistics
  • Stars: 57
  • Watchers: 47
  • Forks: 37
  • Open Issues: 6
  • Releases: 6
Created about 9 years ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

NEON-utilities

NEON-utilities is a repository hosting packages and code for basic data handling for NEON data. It currently contains:

  1. neonUtilities: an R package for discovering, downloading, and working with NEON data files. This builds upon the deprecated pacakge, neonDataStackR.
  2. cheat-sheet-neonUtilities: a cheat sheet for the neonUtilities package. Also available on the NEON website, this is intended to be a quick guide to function inputs for users who are already familiar with the package.

Python

The Python neonutilities package is hosted at https://github.com/NEONScience/NEON-utilities-python. Although the cheat sheet focuses on the R package, the function structure and inputs are nearly identical.

Requests

Bug reports and feature requests should be posted to the Issues page in this repository.

Usage

Specific instructions for using each code/package are provided in the README in each code/package subdirectory.

If you encounter problems with code in this repository, feel free to post an issue.

Credits & Acknowledgements

The National Ecological Observatory Network is a project solely funded by the National Science Foundation and managed under cooperative agreement by Battelle. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

License

GNU AFFERO GENERAL PUBLIC LICENSE Version 3, 19 November 2007

Disclaimer

Information and documents contained within this repository are available as-is. Codes or documents, or their use, may not be supported or maintained under any program or service and may not be compatible with data currently available from the NEON Data Portal.

Owner

  • Name: National Ecological Observatory Network
  • Login: NEONScience
  • Kind: organization
  • Location: Boulder, CO

GitHub Events

Total
  • Create event: 3
  • Release event: 1
  • Issues event: 13
  • Delete event: 1
  • Issue comment event: 15
  • Push event: 58
  • Pull request event: 10
Last Year
  • Create event: 3
  • Release event: 1
  • Issues event: 13
  • Delete event: 1
  • Issue comment event: 15
  • Push event: 58
  • Pull request event: 10

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 851
  • Total Committers: 12
  • Avg Commits per committer: 70.917
  • Development Distribution Score (DDS): 0.65
Past Year
  • Commits: 68
  • Committers: 1
  • Avg Commits per committer: 68.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Claire Lunch c****h@b****g 298
Claire Lunch c****h@n****g 208
NateMietk n****z@g****m 180
chrlaney c****y@b****g 127
kcawley k****y@n****g 11
Christine Laney c****y@n****g 11
Eric R. Sokol e****l@b****g 5
Megan A. Jones m****1@B****g 5
ddurden d****7@g****m 2
Joe Zoller j****r@b****g 2
Nate Mietkiewicz m****z@n****g 1
Claire Lunch c****h@C****l 1
Committer Domains (Top 20 + Academic)
battelleecology.org: 5 neoninc.org: 3 neon-08304.eco.neoninternal.org: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 71
  • Total pull requests: 45
  • Average time to close issues: 5 months
  • Average time to close pull requests: 4 days
  • Total issue authors: 43
  • Total pull request authors: 9
  • Average comments per issue: 3.06
  • Average comments per pull request: 0.69
  • Merged pull requests: 41
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 6
  • Pull requests: 5
  • Average time to close issues: 1 day
  • Average time to close pull requests: less than a minute
  • Issue authors: 5
  • Pull request authors: 1
  • Average comments per issue: 5.67
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cklunch (8)
  • rfiorella (4)
  • mbjoseph (3)
  • NateMietk (3)
  • matthewfeickert (3)
  • walleo860 (3)
  • chrlaney (2)
  • cflagg (2)
  • jcoloso (2)
  • bw4sz (2)
  • vlahm (2)
  • lstanish (2)
  • annakat (2)
  • danielshulee (2)
  • KathleenRuth (2)
Pull Request Authors
  • cklunch (31)
  • NateMietk (12)
  • sokole (1)
  • chrlaney (1)
  • mjones01 (1)
  • rqthomas (1)
  • ddurden (1)
  • rfiorella (1)
  • kcawley (1)
Top Labels
Issue Labels
bug (40) enhancement (16)
Pull Request Labels

Packages

  • Total packages: 3
  • Total downloads:
    • cran 2,475 last-month
  • Total docker downloads: 62,285
  • Total dependent packages: 6
    (may contain duplicates)
  • Total dependent repositories: 31
    (may contain duplicates)
  • Total versions: 43
  • Total maintainers: 1
proxy.golang.org: github.com/NEONScience/NEON-utilities
  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago
proxy.golang.org: github.com/neonscience/neon-utilities
  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago
cran.r-project.org: neonUtilities

Utilities for Working with NEON Data

  • Versions: 31
  • Dependent Packages: 6
  • Dependent Repositories: 31
  • Downloads: 2,475 Last month
  • Docker Downloads: 62,285
Rankings
Forks count: 2.3%
Dependent repos count: 4.8%
Stargazers count: 6.2%
Average: 6.3%
Dependent packages count: 8.0%
Downloads: 10.3%
Maintainers (1)
clunch@battelleecology.org
Last synced: 10 months ago

Dependencies

neonUtilities/DESCRIPTION cran
  • R >= 3.4.0 depends
  • R.utils * imports
  • curl * imports
  • data.table * imports
  • downloader * imports
  • httr * imports
  • jsonlite * imports
  • parallel * imports
  • pbapply * imports
  • stats * imports
  • stringr * imports
  • tidyr * imports
  • utils * imports
  • raster * suggests
  • rhdf5 * suggests
  • sp * suggests
  • testthat * suggests