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Open Source Science

AMPLE

Repository for the AMPLE harvest control rule R-Shiny apps

https://github.com/pacificcommunity/ofp-sam-ample

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (14.4%) to scientific vocabulary

Keywords

ofp sam shiny
Last synced: 6 months ago · JSON representation

Repository

Repository for the AMPLE harvest control rule R-Shiny apps

Basic Info
  • Host: GitHub
  • Owner: PacificCommunity
  • License: gpl-3.0
  • Language: HTML
  • Default Branch: main
  • Homepage:
  • Size: 2.53 MB
Statistics
  • Stars: 0
  • Watchers: 5
  • Forks: 1
  • Open Issues: 0
  • Releases: 2
Topics
ofp sam shiny
Created about 3 years ago · Last pushed over 2 years ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# AMPLE




AMPLE provides three Shiny apps to explore how Harvest Control Rules (HCRs) work and how performance indicators can be used to select between them.

The three apps are:

* *Introduction to HCRs* provides a simple overview to how HCRs work. Users are able to select their own HCR and step through its performance, year by year. Biological variability and estimation error are introduced.
* *Measuring performance* builds on the previous app and introduces the idea of using performance indicators to evaluate HCR performance.
* *Comparing performance* allows multiple HCRs to be created and tested, and their performance compared so that the preferred HCR can be selected.


## Installation

You can install the released version of AMPLE from [CRAN](https://CRAN.R-project.org) with:

``` r
install.packages("AMPLE")
```

Alternatively, you can get the latest version from the GitHub repository [here](https://github.com/PacificCommunity/ofp-sam-ample//) by installing it with the *devtools* package.

``` r
devtools::install_github("PacificCommunity/ofp-sam-ample")
```



## Usage

Load the library as usual:

```{r eval=FALSE}
library(AMPLE)
```

The apps can be launched by calling the appropriate function:

```{r eval=FALSE}
intro_hcr()
```

```{r eval=FALSE}
measuring_performance()
```

```{r eval=FALSE}
comparing_performance()
```

The apps are also hosted online at:

* https://ofp-sam.shinyapps.io/AMPLE-intro-hcr/
* https://ofp-sam.shinyapps.io/AMPLE-measuring-performance/
* https://ofp-sam.shinyapps.io/AMPLE-comparing-performance/

## Vignettes

There are three vignettes that walk users through the app.
These can be used in workshops etc to help learning.

You can access them from R using:

```{r eval=FALSE}
vignette("intro_hcr", package="AMPLE")
vignette("measuring_performance", package="AMPLE")
vignette("comparing_performance", package="AMPLE")
```

The vignettes are also accessible through the Shiny apps, under the 'Information' tab.

Owner

  • Name: Pacific Community (SPC)
  • Login: PacificCommunity
  • Kind: organization
  • Email: hostmaster@spc.int
  • Location: New Caledonia

Pacific Community (SPC) Official GitHub Organization

GitHub Events

Total
Last Year

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 11
  • Total Committers: 1
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Finlay Scott d****t@g****m 11

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
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Packages

  • Total packages: 1
  • Total downloads:
    • cran 375 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
cran.r-project.org: AMPLE

Shiny Apps to Support Capacity Building on Harvest Control Rules

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 375 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Average: 32.7%
Downloads: 34.4%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Maintainers (1)
finlays@spc.int
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • shiny >= 1.7.3 depends
  • R6 >= 2.5.1 imports
  • RColorBrewer * imports
  • ggplot2 >= 3.4.0 imports
  • grDevices * imports
  • graphics * imports
  • markdown * imports
  • scales >= 1.2.1 imports
  • shinyjs >= 2.1.0 imports
  • shinyscreenshot >= 0.2.0 imports
  • stats * imports
  • bookdown * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.1.5 suggests