Andromeda

AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

https://github.com/ohdsi/andromeda

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
1 of 13 committers (7.7%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (14.9%) to scientific vocabulary

Keywords

hades

Last synced: 9 months ago · JSON representation

Repository

AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

Basic Info

Host: GitHub
Owner: OHDSI
Language: R
Default Branch: main
Homepage: https://ohdsi.github.io/Andromeda/
Size: 3.18 MB

Statistics

Stars: 11
Watchers: 10
Forks: 13
Open Issues: 18
Releases: 4

Topics

hades

Created over 6 years ago · Last pushed 10 months ago

Metadata Files

Readme Changelog

Andromeda

Andromeda is part of HADES.

Introduction

AsynchroNous Disk-based Representation of MassivE DAta (ANDROMEDA): An R package for storing large data objects. Andromeda allow storing data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.

Features

Allows storage of data objects much larger than what can fit in memory.
Integrates with dplyr package for data manipulation.
Objects are stored in a temporary location on the local file system.
Ability to save and load the objects to a compressed file in a permanent location on the local file system.

Examples

```r library(Andromeda) bigData <- andromeda()

Add some 'big' data:

bigData$cars <- cars

Manipulate using dplyr:

bigData$cars %>% filter(speed > 10) %>% count() %>% collect()

# A tibble: 1 x 1

n

1 41

saveAndromeda(bigData, "bigData.zip") close(bigData) ```

Technology

The Andromeda package is an R package wrapped around RSQLite.

System Requirements

Running the package requires R.

Installation

To install the latest development version, install from GitHub:

r install.packages("devtools") devtools::install_github("ohdsi/Andromeda")

User Documentation

Documentation can be found on the package website.

Vignette: Using Andromeda
Package manual: Andromeda manual

Support

Developer questions/comments/feedback: OHDSI Forum
We use the GitHub issue tracker for all bugs/issues/enhancements

Contributing

Read here how you can contribute to this package.

License

Andromeda is licensed under Apache License 2.0

Development

Andromeda is being developed in R Studio.

Development status

Beta. Use at your own risk.

Owner

Name: Observational Health Data Sciences and Informatics
Login: OHDSI
Kind: organization

Website: http://ohdsi.org
Repositories: 285
Profile: https://github.com/OHDSI

GitHub Events

Total

Create event: 4
Release event: 2
Issues event: 5
Issue comment event: 13
Push event: 22
Pull request review event: 1
Pull request event: 9
Fork event: 4

Last Year

Create event: 4
Release event: 2
Issues event: 5
Issue comment event: 13
Push event: 22
Pull request review event: 1
Pull request event: 9
Fork event: 4

Committers

Last synced: 11 months ago

All Time

Total Commits: 149
Total Committers: 13
Avg Commits per committer: 11.462
Development Distribution Score (DDS): 0.664

Past Year

Commits: 19
Committers: 7
Avg Commits per committer: 2.714
Development Distribution Score (DDS): 0.474

Top Committers

Name	Email	Commits
schuemie	s**e@o**g	50
Schuemie	M**I@i**m	37
Adam Black	a**k@o**m	26
Adam Black	a****3	15
Marc Suchard	m**d@u**u	9
Admin_mschuemi	A**i@i**m	3
Adam Black	a**k@a**n	3
Hadley Wickham	h**m@g**m	1
Egill Axfjord Fridgeirsson	e**x@g**m	1
Bill O'Brien	w**n@g**m	1
OBrien	w**n@v**v	1
OBrien	W**n@v**v	1
Adam Black	a**k@A**l	1

Committer Domains (Top 20 + Academic)

va.gov: 2 its.jnj.com: 2 adams-mbp.lan: 1 ucla.edu: 1 odysseusinc.com: 1 ohdsi.org: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 39
Total pull requests: 34
Average time to close issues: 5 months
Average time to close pull requests: about 1 month
Total issue authors: 18
Total pull request authors: 7
Average comments per issue: 6.21
Average comments per pull request: 1.41
Merged pull requests: 22
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 2
Pull requests: 6
Average time to close issues: 2 days
Average time to close pull requests: 26 days
Issue authors: 1
Pull request authors: 3
Average comments per issue: 0.5
Average comments per pull request: 0.33
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

schuemie (9)
ablack3 (5)
egillax (5)
lhjohn (2)
gowthamrao (2)
msuchard (2)
jreps (2)
Tolderck558 (1)
azimov (1)
solis9753 (1)
jduke99 (1)
DrTTrousers (1)
hms1 (1)
tomseinen (1)
mvankessel-EMC (1)

Pull Request Authors

ablack3 (21)
egillax (5)
schuemie (4)
hadley (2)
msuchard (2)
ob325 (2)
olivroy (2)
mgirlich (1)

Top Labels

Issue Labels

enhancement (2)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 1,806 last-month
Total docker downloads: 42,216

Total dependent packages: 5
Total dependent repositories: 44
Total versions: 17
Total maintainers: 1

cran.r-project.org: Andromeda

Asynchronous Disk-Based Representation of Massive Data

Homepage: https://github.com/OHDSI/Andromeda
Documentation: http://cran.r-project.org/web/packages/Andromeda/Andromeda.pdf
License: Apache License 2.0
Latest release: 1.1.1
published 10 months ago

Versions: 17
Dependent Packages: 5
Dependent Repositories: 44
Downloads: 1,806 Last month
Docker Downloads: 42,216

Rankings

Docker downloads count: 0.6%

Dependent repos count: 3.8%

Forks count: 7.9%

Average: 8.6%

Dependent packages count: 10.9%

Downloads: 11.1%

Stargazers count: 17.4%

Maintainers (1)

schuemie@ohdsi.org

Last synced: 10 months ago

Dependencies

DESCRIPTION cran

dplyr * depends
DBI * imports
RSQLite * imports
cli * imports
dbplyr * imports
hms * imports
methods * imports
pillar * imports
rlang * imports
tidyselect * imports
zip * imports
knitr * suggests
rJava * suggests
rcmdcheck * suggests
rmarkdown * suggests
stringr * suggests
testthat * suggests
tibble * suggests

.github/workflows/R_CMD_check_Hades.yaml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/download-artifact v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-tinytex v2 composite

.github/workflows/R_CMD_check_main_weekly.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite
r-lib/actions/setup-tinytex v2 composite

.github/workflows/nightly_cleanup_Hades.yml actions

c-hive/gha-remove-artifacts v1 composite

Andromeda

Science Score: 36.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

Andromeda

Introduction

Features

Examples

Add some 'big' data:

Manipulate using dplyr:

# A tibble: 1 x 1

n

1 41

Technology

System Requirements

Installation

User Documentation

Support

Contributing

License

Development

Development status

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

cran.r-project.org: Andromeda

Rankings

Maintainers (1)

Dependencies