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aroma.cn

🔬 R package: aroma.cn

https://github.com/henrikbengtsson/aroma.cn

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • â—‹
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • â—‹
    .zenodo.json file
  • â—‹
    DOI references
  • â—‹
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • â—‹
    Institutional organization owner
  • â—‹
    JOSS paper metadata
  • â—‹
    Scientific vocabulary similarity
    Low similarity (10.0%) to scientific vocabulary

Keywords

package r

Keywords from Contributors

microarray affymetrix copy-number dna expression large-scale notebook reproducibility rna
Last synced: 11 months ago · JSON representation

Repository

🔬 R package: aroma.cn

Basic Info
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
package r
Created about 12 years ago · Last pushed over 2 years ago
Metadata Files
Readme Changelog Contributing

README.md

CRAN check status R CMD check status Coverage Status

aroma.cn: Copy-Number Analysis of Large Microarray Data Sets

Installation

R package aroma.cn is available on CRAN and can be installed in R as: r install.packages("aroma.cn")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use: r remotes::install_github("HenrikBengtsson/aroma.cn", ref="develop") This will install the package from source.

Contributing

To contribute to this package, please see CONTRIBUTING.md.

Owner

  • Name: Henrik Bengtsson
  • Login: HenrikBengtsson
  • Kind: user
  • Company: UCSF

Assoc Professor. R Foundation. R Consortium. Many R packages, e.g. future & matrixStats.

GitHub Events

Total
Last Year

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 306
  • Total Committers: 4
  • Avg Commits per committer: 76.5
  • Development Distribution Score (DDS): 0.078
Past Year
  • Commits: 4
  • Committers: 1
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Henrik Bengtsson hb@a****g 282
Pierre Neuvial p****l@g****r 18
Henrik Bengtsson h****n@g****m 4
gara-z g****a@g****m 2
Committer Domains (Top 20 + Academic)
genopole.cnrs.fr: 1 aroma-project.org: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 13
  • Total pull requests: 1
  • Average time to close issues: over 1 year
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.62
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HenrikBengtsson (13)
Pull Request Authors
  • gara-z (1)
Top Labels
Issue Labels
enhancement (5) wontfix (2) help wanted (1) CRAN Policy (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 481 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 4
  • Total versions: 17
  • Total maintainers: 1
cran.r-project.org: aroma.cn

Copy-Number Analysis of Large Microarray Data Sets

  • Versions: 17
  • Dependent Packages: 1
  • Dependent Repositories: 4
  • Downloads: 481 Last month
Rankings
Dependent repos count: 14.6%
Dependent packages count: 18.1%
Average: 24.3%
Forks count: 27.8%
Downloads: 30.0%
Stargazers count: 30.9%
Maintainers (1)
henrikb@braju.com
Last synced: 11 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/covr.yaml actions
  • actions/cache v4 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
DESCRIPTION cran
  • R >= 3.1.2 depends
  • R.utils >= 2.11.0 depends
  • aroma.core >= 3.2.2 depends
  • PSCBS >= 0.65.0 imports
  • R.cache >= 0.15.0 imports
  • R.filesets >= 2.14.0 imports
  • R.methodsS3 >= 1.8.1 imports
  • R.oo >= 1.24.0 imports
  • future.apply * imports
  • matrixStats >= 0.61.0 imports
  • DNAcopy >= 1.40.0 suggests
  • GLAD >= 1.12.0 suggests
  • aroma.light >= 2.2.1 suggests