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ConR

ConR

https://github.com/gdauby/conr

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: wiley.com
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.8%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

ConR

Basic Info
Statistics
  • Stars: 13
  • Watchers: 5
  • Forks: 3
  • Open Issues: 8
  • Releases: 2
Created about 9 years ago · Last pushed over 2 years ago
Metadata Files
Readme

README.md

ConR package



The ConR package aims at assisting the preliminary assessment of species conservation status based on the International Union for Conservation of Nature (IUCN) Red List Categories and Criteria. More specifically, it helps users to calculate the population metrics related to the IUCN criteria A, B, C and D and to assign one of the IUCN categories (i.e. EX, EW, CR, EN, VU, NT, LC, DD). It was developed speed up the assessment of hundreds to thousands of species at the same time.

The ideas behind this package, and its testing involved many people and institutes.

The package it not available anymore on CRAN because of the recent retirement of various packages (rgdal, rgeos). The new version is nevertheless available on github and will soon be available on CRAN.

To install the github version :

install.packages("devtools")
devtools::install_github("gdauby/ConR")

Install R, ConR and dependent packages

First step. Install R.

Loading ConR

Attach ConR package This should be done everytime you open an R session.

library(ConR)

Help files Any function in R is documented by a help file which can be obtained by the following code:

?EOO.computing
?AOO.computing
?subpop.comp
?locations.comp
?criterion_A
?EOO.sensitivity

A mode detailed manual on how to use this package is available here.

Funding

The development of this package was supported by:

  • the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 795114 (THREAT project)

  • CESAB (Centre for the Synthesis and Analysis of Biodiversity). Research program of the FRB (Foundation for Research on Biodiversity) under the RAINBIO project.

Citation

G. Dauby & R. A. F. de Lima (2023). ConR: Computation of Parameters Used in Preliminary Assessment of Species Conservation Status. R package (version 2.1.0).

See Also

Other R packages related to IUCN assessments:

Owner

  • Login: gdauby
  • Kind: user
  • Company: French National Research Institute for Sustainable Development

Research Associate

GitHub Events

Total
  • Watch event: 2
Last Year
  • Watch event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 457
  • Total Committers: 3
  • Avg Commits per committer: 152.333
  • Development Distribution Score (DDS): 0.101
Past Year
  • Commits: 76
  • Committers: 2
  • Avg Commits per committer: 38.0
  • Development Distribution Score (DDS): 0.263
Top Committers
Name Email Commits
gdauby g****y@g****m 411
raflima1981 r****a@u****r 45
miriamfloresherrera g****y@i****r 1
Committer Domains (Top 20 + Academic)
ird.fr: 1 usp.br: 1

Issues and Pull Requests

Last synced: about 2 years ago

All Time
  • Total issues: 28
  • Total pull requests: 11
  • Average time to close issues: about 1 year
  • Average time to close pull requests: 2 days
  • Total issue authors: 14
  • Total pull request authors: 2
  • Average comments per issue: 2.11
  • Average comments per pull request: 0.09
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 6
  • Pull requests: 4
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 11 hours
  • Issue authors: 5
  • Pull request authors: 2
  • Average comments per issue: 2.33
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • gdauby (7)
  • LimaRAF (5)
  • rsbivand (3)
  • pvictor (2)
  • AMBarbosa (2)
  • samuel-chang (1)
  • Erythroxylum (1)
  • Marcosfrog (1)
  • Watashi26 (1)
  • pjbouchet (1)
  • thiagosfsilva (1)
  • amcilwee (1)
  • ggrittz (1)
Pull Request Authors
  • LimaRAF (10)
  • gdauby (1)
Top Labels
Issue Labels
enhancement (8) help wanted (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 715 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 4
  • Total versions: 8
  • Total maintainers: 1
cran.r-project.org: ConR

Computation of Parameters Used in Preliminary Assessment of Conservation Status

  • Versions: 8
  • Dependent Packages: 1
  • Dependent Repositories: 4
  • Downloads: 715 Last month
Rankings
Forks count: 14.3%
Dependent repos count: 14.8%
Stargazers count: 15.2%
Average: 16.6%
Dependent packages count: 17.6%
Downloads: 21.3%
Maintainers (1)
gildauby@gmail.com
Last synced: about 2 years ago

Dependencies

DESCRIPTION cran
  • R >= 3.3 depends
  • raster * depends
  • sp * depends
  • doSNOW * imports
  • fields * imports
  • foreach * imports
  • geosphere * imports
  • grDevices * imports
  • methods * imports
  • rgdal * imports
  • rgeos * imports
  • rnaturalearth * imports
  • sf * imports
  • snow * imports
  • tibble * imports
  • writexl * imports
  • alphahull * suggests
  • rmarkdown * suggests
  • rnaturalearthdata * suggests
  • testthat * suggests
.github/workflows/pkgdown.yaml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite