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nimbleEcology

https://github.com/nimble-dev/nimbleecology

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: springer.com
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: nimble-dev
  • Language: R
  • Default Branch: master
  • Size: 1020 KB
Statistics
  • Stars: 18
  • Watchers: 8
  • Forks: 8
  • Open Issues: 9
  • Releases: 7
Created over 7 years ago · Last pushed 9 months ago
Metadata Files
Readme

README.md

Build Status

Distributions for Ecological Models in 'nimble'

This repository provides user-defined distributions that can be used in NIMBLE models for common population ecology statistical models. These include distributions for:

  • basic capture-recapture distributions (Cormack-Jolly-Seber),
  • hidden Markov model distributions for multi-state and multi-event capture-recapture models,
  • occupancy models,
  • dynamic occupancy models, and
  • N-mixture models.

Community contributions or suggestions for other needs are welcome.

Some of these models were used (in slightly different forms) in:

D. Turek, P. de Valpine, and C. J. Paciorek. 2016. Efficient Markov chain Monte Carlo sampling for hierarchical hidden Markov models. Environmental and Ecological Statistics 4:549-564.

Owner

  • Name: nimble-dev
  • Login: nimble-dev
  • Kind: organization

GitHub Events

Total
  • Issues event: 5
  • Issue comment event: 9
  • Push event: 11
  • Pull request event: 4
  • Create event: 2
Last Year
  • Issues event: 5
  • Issue comment event: 9
  • Push event: 11
  • Pull request event: 4
  • Create event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 233
  • Total Committers: 3
  • Avg Commits per committer: 77.667
  • Development Distribution Score (DDS): 0.253
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
dochvam d****m@g****m 174
Ben Goldstein b****n@b****u 44
perrydv p****e@b****u 15
Committer Domains (Top 20 + Academic)
berkeley.edu: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 11
  • Total pull requests: 25
  • Average time to close issues: 2 months
  • Average time to close pull requests: 3 months
  • Total issue authors: 5
  • Total pull request authors: 7
  • Average comments per issue: 1.09
  • Average comments per pull request: 1.08
  • Merged pull requests: 20
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 4
  • Average time to close issues: N/A
  • Average time to close pull requests: 23 days
  • Issue authors: 2
  • Pull request authors: 3
  • Average comments per issue: 0.6
  • Average comments per pull request: 2.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • paciorek (7)
  • perrydv (1)
  • DrMattG (1)
  • paul-vdb (1)
  • maxdrohde (1)
  • dochvam (1)
Pull Request Authors
  • dochvam (19)
  • kenkellner (4)
  • perrydv (2)
  • paciorek (2)
  • cboettig (2)
  • juniperlsimonis (1)
  • weizhangstats (1)
Top Labels
Issue Labels
question (1) enhancement (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 379 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 2
  • Total versions: 9
  • Total maintainers: 1
cran.r-project.org: nimbleEcology

Distributions for Ecological Models in 'nimble'

  • Versions: 9
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 379 Last month
Rankings
Forks count: 7.9%
Stargazers count: 13.3%
Dependent repos count: 19.2%
Average: 20.0%
Dependent packages count: 28.7%
Downloads: 30.7%
Maintainers (1)
bgoldst2@ncsu.edu
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.4.0 depends
  • nimble * depends
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 2.1.0 suggests
.github/workflows/check.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite
.github/workflows/check_windows.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite