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ctmm

Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

https://github.com/ctmm-initiative/ctmm

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 4 committers (100.0%) from academic institutions
  • ✓
    Institutional organization owner
    Organization ctmm-initiative has institutional domain (biology.umd.edu)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

Basic Info
Statistics
  • Stars: 53
  • Watchers: 7
  • Forks: 13
  • Open Issues: 10
  • Releases: 1
Created about 9 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog Funding

README.md

ctmm: Continuous-Time Movement Modeling

ctmm is an R package for analyzing animal tracking data as a continuous-time stochastic processes. Package features include FFT variogram and Lomb-Scargle periodogram analysis, perturbative REML estimation, Kriging, simulation, and autocorrelated kernel-density home-range estimation.

New user resources:

More links:

Installation

Installing the latest stable release from CRAN: r install.packages("ctmm")

Installing the latest development release from Github: r remotes::install_github("ctmm-initiative/ctmm") or r devtools::install_github("ctmm-initiative/ctmm")

Owner

  • Name: Continuous-Time Movement Modeling (CTMM) Initiative
  • Login: ctmm-initiative
  • Kind: organization
  • Email: flemingc@si.edu

ctmm is an R package for analyzing animal tracking data as a continuous-time stochastic process

GitHub Events

Total
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 33
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Watch event: 2
  • Issue comment event: 1
  • Push event: 33
  • Pull request event: 2
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 542
  • Total Committers: 4
  • Avg Commits per committer: 135.5
  • Development Distribution Score (DDS): 0.517
Past Year
  • Commits: 78
  • Committers: 1
  • Avg Commits per committer: 78.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Christen H. Fleming f****c@s****u 262
Christen H. Fleming h****g@u****u 259
Xianghui Dong x****g@u****u 14
Kevin Winner k****r@c****u 7
Committer Domains (Top 20 + Academic)
umd.edu: 2 cs.umass.edu: 1 si.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 50
  • Total pull requests: 12
  • Average time to close issues: 2 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 29
  • Total pull request authors: 6
  • Average comments per issue: 3.78
  • Average comments per pull request: 2.42
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: 4 days
  • Average time to close pull requests: 2 months
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • xhdong-umd (13)
  • chfleming (6)
  • jmsigner (2)
  • bniebuhr (2)
  • cwilhite4151 (2)
  • taoofcoffee (2)
  • katkagasparova (1)
  • r-menezes (1)
  • wenzmo (1)
  • tdokhelar (1)
  • jfsmenezes (1)
  • padpadpadpad (1)
  • JosiahParry (1)
  • krlmlr (1)
  • Kasi21 (1)
Pull Request Authors
  • xhdong-umd (5)
  • katrinabrock (5)
  • r-menezes (3)
  • bart1 (1)
  • dendroica (1)
  • chfleming (1)
Top Labels
Issue Labels
Done (3) maybe (1)
Pull Request Labels
Done (1)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 1,938 last-month
  • Total docker downloads: 22,468
  • Total dependent packages: 4
  • Total dependent repositories: 12
  • Total versions: 29
  • Total maintainers: 1
cran.r-project.org: ctmm

Continuous-Time Movement Modeling

  • Versions: 29
  • Dependent Packages: 4
  • Dependent Repositories: 12
  • Downloads: 1,938 Last month
  • Docker Downloads: 22,468
Rankings
Docker downloads count: 0.6%
Average: 7.7%
Stargazers count: 8.2%
Dependent repos count: 8.3%
Dependent packages count: 9.3%
Forks count: 9.6%
Downloads: 10.0%
Maintainers (1)
flemingc@si.edu
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Bessel * imports
  • Gmedian * imports
  • MASS * imports
  • data.table * imports
  • digest * imports
  • expm * imports
  • fasttime * imports
  • grDevices * imports
  • graphics * imports
  • gsl * imports
  • manipulate * imports
  • methods * imports
  • numDeriv * imports
  • pbivnorm * imports
  • pracma * imports
  • raster * imports
  • rgdal * imports
  • shape * imports
  • sp * imports
  • statmod * imports
  • stats * imports
  • utils * imports
  • animation * suggests
  • bit64 * suggests
  • dplyr * suggests
  • fftw * suggests
  • knitr * suggests
  • move * suggests
  • parallel * suggests
  • parsedate * suggests
  • quadprog * suggests
  • rmarkdown * suggests
  • sf * suggests
  • suncalc * suggests