DrImpute
Imputing dropout events in single-cell RNA-sequencing data.
Science Score: 20.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: biorxiv.org -
✓Committers with academic emails
1 of 1 committers (100.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.4%) to scientific vocabulary
Repository
Imputing dropout events in single-cell RNA-sequencing data.
Basic Info
- Host: GitHub
- Owner: ikwak2
- Language: HTML
- Default Branch: master
- Size: 12.1 MB
Statistics
- Stars: 4
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
R package, DrImpute
Il-Youp Kwak (ilyoup.kwak@gmail.com), with contributions from Wuming Gong.
R/DrImpute is an R package for imputing dropout events in single-cell RNA-sequencing data. It improve many statistical tools used for scRNA-seq analysis that do not account for dropout events.
Details are described here
installation
From CRAN :
S
install.packages("DrImpute")
Or, with devtools:
S
library(devtools)
install_github("ikwak2/DrImpute")
License
The R/DrImpute package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, version 3, as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU General Public License for more details.
A copy of the GNU General Public License, version 3, is available at https://www.r-project.org/Licenses/GPL-3
Owner
- Name: Il-Youp Kwak
- Login: ikwak2
- Kind: user
- Company: Chung-Ang University
- Repositories: 21
- Profile: https://github.com/ikwak2
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| ilyoup kwak | i****k@u****u | 22 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 3
- Total pull requests: 0
- Average time to close issues: 30 days
- Average time to close pull requests: N/A
- Total issue authors: 3
- Total pull request authors: 0
- Average comments per issue: 1.67
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- HichamAffia (1)
- tallulandrews (1)
- gufranca (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- cran 280 last-month
- Total docker downloads: 21,202
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Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 3
(may contain duplicates) - Total versions: 2
- Total maintainers: 1
cran.r-project.org: DrImpute
Imputing Dropout Events in Single-Cell RNA-Sequencing Data
- Homepage: https://github.com/ikwak2/DrImpute
- Documentation: http://cran.r-project.org/web/packages/DrImpute/DrImpute.pdf
- License: GPL-3
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Latest release: 1.0
published about 9 years ago
Rankings
Maintainers (1)
conda-forge.org: r-drimpute
- Homepage: https://github.com/ikwak2/DrImpute
- License: GPL-3.0-only
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Latest release: 1.0
published over 5 years ago
Rankings
Dependencies
- R >= 3.1.0 depends
- Rcpp * imports
- devtools * suggests
- irlba * suggests
- knitr * suggests
- rmarkdown * suggests
- roxygen2 * suggests