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dsm

Density surface modelling for distance sampling.

https://github.com/distancedevelopment/dsm

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 8 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

Density surface modelling for distance sampling.

Basic Info
Statistics
  • Stars: 8
  • Watchers: 10
  • Forks: 9
  • Open Issues: 17
  • Releases: 10
Created about 12 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog License

README.md

dsm - Density surface modelling

Build Status CRAN (RStudio Mirror) Downloads CRAN Version

What is dsm?

dsm provides a Generalized Additive Model (GAM)-based approach to calculate spatially-explicit estimates of animal abundance from distance sampling (also presence/absence and strip transect) data. Several utility functions are provided for model checking, plotting and variance estimation.

Open Access paper describing the methods:

  • Miller, DL, ML Burt, EA Rexstad and L Thomas (2013). Spatial models for distance sampling data: recent developments and future directions. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.12105

Using dsm

Examples of how to use dsm see

  • https://distancesampling.org/dsm/articles/data_format/dsm-data-formatting.html
  • https://distancesampling.org/dsm/articles/lines_gomex/mexico-analysis.html

Owner

  • Name: Distance development
  • Login: DistanceDevelopment
  • Kind: organization
  • Email: distance@st-andrews.ac.uk
  • Location: University of St Andrews

Distance sampling software development team

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 15
  • Push event: 7
  • Pull request event: 3
Last Year
  • Issues event: 2
  • Issue comment event: 15
  • Push event: 7
  • Pull request event: 3

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 510
  • Total Committers: 8
  • Avg Commits per committer: 63.75
  • Development Distribution Score (DDS): 0.365
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
David Lawrence Miller g****b@n****t 324
David Lawrence Miller d****e@n****t 154
Laura Marshall L****l@y****k 20
lenthomas l****n@m****k 5
David Lawrence Miller d****l@h****l 3
erex e****l@g****m 2
Len Thomas l****s@s****k 1
Oliver Keyes i****s@g****m 1
Committer Domains (Top 20 + Academic)
ninepointeightone.net: 2 st-andrews.ac.uk: 1 mcs.st-and.ac.uk: 1 yahoo.co.uk: 1

Issues and Pull Requests

Last synced: over 2 years ago

All Time
  • Total issues: 45
  • Total pull requests: 4
  • Average time to close issues: over 2 years
  • Average time to close pull requests: 3 days
  • Total issue authors: 7
  • Total pull request authors: 4
  • Average comments per issue: 3.02
  • Average comments per pull request: 0.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 6
  • Pull requests: 1
  • Average time to close issues: about 18 hours
  • Average time to close pull requests: N/A
  • Issue authors: 3
  • Pull request authors: 1
  • Average comments per issue: 1.33
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • dill (26)
  • erex (10)
  • dfifield (3)
  • LHMarshall (2)
  • lenthomas (2)
  • VLucet (1)
  • deervale (1)
  • jjrob (1)
Pull Request Authors
  • LHMarshall (3)
  • dill (1)
  • Ironholds (1)
  • VLucet (1)
Top Labels
Issue Labels
enhancement (12) bug (6) question (2) low-priority (1) wontfix (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 543 last-month
  • Total docker downloads: 43,390
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 18
  • Total maintainers: 1
cran.r-project.org: dsm

Density Surface Modelling of Distance Sampling Data

  • Versions: 18
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 543 Last month
  • Docker Downloads: 43,390
Rankings
Docker downloads count: 0.6%
Forks count: 7.3%
Average: 17.6%
Stargazers count: 19.3%
Dependent repos count: 24.0%
Downloads: 25.6%
Dependent packages count: 28.8%
Maintainers (1)
lhm@st-andrews.ac.uk
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • mgcv >= 1.8 depends
  • mrds >= 2.1.16 depends
  • numDeriv * depends
  • ggplot2 * imports
  • nlme * imports
  • plyr * imports
  • statmod * imports
  • Distance * suggests
  • sp * suggests
  • testthat * suggests
  • tweedie * suggests
.github/workflows/test-coverage.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
.github/workflows/rhub.yaml actions
  • r-hub/actions/checkout v1 composite
  • r-hub/actions/platform-info v1 composite
  • r-hub/actions/run-check v1 composite
  • r-hub/actions/setup v1 composite
  • r-hub/actions/setup-deps v1 composite
  • r-hub/actions/setup-r v1 composite