rfUtilities
R package for random forests model selection, inference, evaluation and validation
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (8.9%) to scientific vocabulary
Keywords
Repository
R package for random forests model selection, inference, evaluation and validation
Basic Info
Statistics
- Stars: 24
- Watchers: 2
- Forks: 13
- Open Issues: 6
- Releases: 0
Topics
Metadata Files
README.md
rfUtilities (CRAN 2.1-5, development 2.2-0)
R package for random forests model selection, class balance and validation
Random Forests Model Selection, inference, fit and performance evaluation
rfUtilities 2.2-0 (GitHub development release) - added ranger random forests implementation support
Available functions in rfUtilities 2.2-0 are:
| Code | Description |
|:-----------------------------|----------------------------------------------------------------------------------------|
| accuracy | Calculates suite of accuracy statistics for classification or regression models (called by rf.crossValidation)
| bivariate.partialDependence | Bivariate partial-dependency plot
| collinear | Evaluation of pair-wise linear or nonlinear correlations in data
| ensembleTest | (experimental) test for degree of correlation across the ensemble, over correlation can indicate overfit
| logLoss | Calculates Logarithmic or Likelihood loss function
| multi.collinear | Multi-collinearity test with matrix permutation.
| occurrence.threshold | A statistical sensitivity test for occurrence probability thresholds
| probability.calibration | Isotonic probability calibration
| ranger.proximity | Derives a proximity matrix for a ranger object
| rf.class.sensitivity | Random Forests class-level sensitivity analysis
| rf.classBalance | Random Forests Class Balance (Zero Inflation Correction) Model with covariance convergence
| rf.combine | Combine Random Forests Ensembles
| rf.crossValidation | Random Forests classification or regression cross-validation, added simplified arguments and ranger support
| rf.effectSize | Random Forests class-level parameter effect size
| rf.imp.freq | Random Forests variable selection frequency
| rf.modelSel | Random Forests Model Selection, simplified arguments and added ranger support
| rf.partial.ci | Random Forests regression partial dependency plot with confidence intervals
| rf.partial.prob | Random Forest probability scaled partial dependency plots
| rf.regression.fit | Evaluates fit and overfit of random forests regression models
| rf.significance | Significance test for classification or regression random forests models, simplified arguments and added ranger support
| rf.unsupervised | Unsupervised Random Forests with cluster support
| spatial.uncertainty | (experimental) creates spatial estimate of uncertainty using an Infinitesimal Jackknife to calculate standard errors
Bugs: Users are encouraged to report bugs here. Go to issues in the menu above, and press new issue to start a new bug report, documentation correction or feature request. You can direct questions to
To install rfUtilities in R use install.packages() to download current stable release from CRAN
or, for the development version, run the following (requires the remotes package):
remotes::install_github("jeffreyevans/rfUtilities")
Tutorial: See (http://evansmurphy.wixsite.com/evansspatial/random-forest-sdm).
Owner
- Name: Jeffrey S. Evans
- Login: jeffreyevans
- Kind: user
- Location: Wyoming
- Company: The Nature Conservancy and University of Wyoming
- Website: http://evansmurphy.wix.com/evansspatial
- Repositories: 3
- Profile: https://github.com/jeffreyevans
I am a senior landscape ecologist with The Nature Conservancy's, Global Lands Science Team and a visiting scholar at University of Wyoming.
GitHub Events
Total
- Issues event: 2
- Watch event: 2
- Issue comment event: 4
- Fork event: 2
Last Year
- Issues event: 2
- Watch event: 2
- Issue comment event: 4
- Fork event: 2
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jeffrey S. Evans | j****s | 74 |
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 9
- Total pull requests: 3
- Average time to close issues: 19 days
- Average time to close pull requests: 2 days
- Total issue authors: 8
- Total pull request authors: 3
- Average comments per issue: 2.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 3.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- bi0m3trics (2)
- DeFilippis (1)
- JMFiore (1)
- mzeybek583 (1)
- ManuelSpinola (1)
- nikosGeography (1)
- jcarlis3 (1)
- friendly (1)
- AKatydid (1)
Pull Request Authors
- hughjonesd (2)
- jeffreyevans (1)
- mzeybek583 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 745 last-month
- Total dependent packages: 0
- Total dependent repositories: 3
- Total versions: 11
- Total maintainers: 1
cran.r-project.org: rfUtilities
Random Forests Model Selection and Performance Evaluation
- Homepage: https://github.com/jeffreyevans/rfUtilities
- Documentation: http://cran.r-project.org/web/packages/rfUtilities/rfUtilities.pdf
- License: GPL-3
- Status: removed
-
Latest release: 2.1-5
published over 6 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.0 depends
- cluster * imports
- mgcv * imports
- randomForest * imports
- ranger * imports
- actions/checkout v2 composite
- r-lib/actions/setup-r ffe45a39586f073cc2e9af79c4ba563b657dc6e3 composite