flexsurv
The flexsurv R package for flexible parametric survival and multi-state modelling
Science Score: 36.0%
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○CITATION.cff file
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○DOI references
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○Academic publication links
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5 of 22 committers (22.7%) from academic institutions -
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○Scientific vocabulary similarity
Low similarity (17.0%) to scientific vocabulary
Repository
The flexsurv R package for flexible parametric survival and multi-state modelling
Basic Info
- Host: GitHub
- Owner: chjackson
- Language: R
- Default Branch: master
- Homepage: http://chjackson.github.io/flexsurv/
- Size: 32.1 MB
Statistics
- Stars: 63
- Watchers: 6
- Forks: 28
- Open Issues: 24
- Releases: 10
Metadata Files
README.md
flexsurv 
The flexsurv R package for parametric survival and multi-state modelling.
Key features
Parametric models for time-to-event (survival) data. Data may be right-censored, and/or left-censored, and/or left-truncated. Several built-in parametric distributions are available, including a very flexible model based on splines (Royston and Parmar).
Any user-defined parametric model can be employed by supplying R functions defining the distribution.
Covariates can be included using a (log-)linear model on any parameter of any distribution. This typically defines an accelerated failure time or proportional hazards model.
Multi-state models for continuously-observed data can be defined by piecing together transition-specific parametric models of any kind. (For intermittently-observed data, see instead the msm package.)
Learn more
Guide to multi-state modelling in flexsurv.
Full reference manual for all the package's functions.
Paper in Journal of Statistical Software (Jackson 2016). Mostly the same as the user guide, but not kept up to date.
Installation (stable CRAN version)
r
install.packages("flexsurv")
Installation (development version)
r
install.packages("devtools") # if devtools not already installed
devtools::install_github('chjackson/flexsurv-dev')
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Owner
- Name: Chris Jackson
- Login: chjackson
- Kind: user
- Website: http://twitter.com/cjackstats
- Repositories: 22
- Profile: https://github.com/chjackson
Statistician and programmer
GitHub Events
Total
- Issues event: 17
- Watch event: 6
- Issue comment event: 34
- Push event: 11
- Pull request event: 2
- Fork event: 1
Last Year
- Issues event: 17
- Watch event: 6
- Issue comment event: 34
- Push event: 11
- Pull request event: 2
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Chris Jackson | c****n@m****k | 371 |
| Sweeting, Michael | m****g@a****m | 34 |
| Jordan Amdahl | j****l@g****m | 16 |
| Matthew T. Warkentin | m****n@m****a | 16 |
| Paul Metcalfe | P****e@a****m | 16 |
| Chris Jackson | c****n | 13 |
| Chris Jackson | c****s@l****k | 13 |
| Jordan Amdahl | j****l@C****n | 8 |
| Kevin Kunzmann | k****n@m****k | 8 |
| Paul Metcalfe | p****e@g****m | 8 |
| Niels Dunnewind | n****s@n****l | 6 |
| Jordan Amdahl | j****l@C****l | 5 |
| Matthew T. Warkentin | w****n@l****a | 5 |
| leonardo | l****s@g****m | 3 |
| Kunzmann,Kevin (MED BDS) BIP-DE-I | k****n@b****m | 2 |
| Hannah Frick | h****h@r****m | 2 |
| David A McAllister | d****r@g****k | 1 |
| Alessandro Gasparini | g****t@e****z | 1 |
| andbe | a****e@g****m | 1 |
| stephematician | s****n@g****m | 1 |
| Hadley Wickham | h****m@g****m | 1 |
| Niels Dunnewind | 4****d | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 6
- Total pull requests: 1
- Average time to close issues: 10 days
- Average time to close pull requests: about 19 hours
- Total issue authors: 5
- Total pull request authors: 1
- Average comments per issue: 1.17
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 1
- Average time to close issues: 10 days
- Average time to close pull requests: about 19 hours
- Issue authors: 5
- Pull request authors: 1
- Average comments per issue: 1.17
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mafed (2)
- mikesweeting (2)
- chjackson (2)
- stephematician (2)
- hustu (1)
- MWIESNERVOLVO (1)
- Alebarbar (1)
- connor-ballinger (1)
- sbihorel (1)
- JaneSweets (1)
- Lee-xli (1)
- hfrick (1)
- jwb133 (1)
- anddis (1)
- mcincam100 (1)
Pull Request Authors
- mikesweeting (2)
- stephematician (2)
- irtimmins (1)
- remlapmot (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 6,708 last-month
- Total docker downloads: 43,526
- Total dependent packages: 48
- Total dependent repositories: 59
- Total versions: 20
- Total maintainers: 1
cran.r-project.org: flexsurv
Flexible Parametric Survival and Multi-State Models
- Homepage: https://github.com/chjackson/flexsurv
- Documentation: http://cran.r-project.org/web/packages/flexsurv/flexsurv.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 2.3.2
published almost 2 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.15.0 depends
- survival * depends
- Matrix * imports
- Rcpp >= 0.11.5 imports
- assertthat * imports
- deSolve * imports
- dplyr * imports
- generics * imports
- ggplot2 * imports
- magrittr * imports
- mstate >= 0.2.10 imports
- muhaz * imports
- mvtnorm * imports
- numDeriv * imports
- purrr * imports
- quadprog * imports
- rlang * imports
- rstpm2 * imports
- statmod * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- TH.data * suggests
- colorspace * suggests
- eha * suggests
- flexsurvcure * suggests
- knitr * suggests
- lubridate * suggests
- msm * suggests
- rmarkdown * suggests
- survminer * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-tinytex v1 composite
- actions/checkout v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite