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EDASeq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

https://github.com/drisso/edaseq

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 13 committers (7.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.3%) to scientific vocabulary

Keywords from Contributors

bioconductor-package genomics gene metabolomics human-cell-atlas proteomics mass-spectrometry core-package bioinformatics bioconductor
Last synced: 11 months ago · JSON representation

Repository

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

Basic Info
  • Host: GitHub
  • Owner: drisso
  • Language: R
  • Default Branch: master
  • Size: 197 KB
Statistics
  • Stars: 5
  • Watchers: 1
  • Forks: 1
  • Open Issues: 8
  • Releases: 0
Created about 8 years ago · Last pushed about 5 years ago
Metadata Files
Readme

README.md

R package: EDASeq

This is the developer version of the Bioconductor package EDASeq. Install in R as:

r install.packages("BiocManager") BiocManager::install("EDASeq")

Status

  • Bioc-release
  • Bioc-devel:
  • Travis CI: Build Status

Issues and bug reports

Please use https://github.com/drisso/EDASeq/issues to submit issues, bug reports, and comments.

Owner

  • Name: Davide Risso
  • Login: drisso
  • Kind: user
  • Location: New York, NY
  • Company: Weill Cornell Medicine

GitHub Events

Total
  • Issues event: 1
  • Watch event: 1
Last Year
  • Issues event: 1
  • Watch event: 1

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 112
  • Total Committers: 13
  • Avg Commits per committer: 8.615
  • Development Distribution Score (DDS): 0.589
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Davide Risso r****e@g****m 46
Dan Tenenbaum d****a@f****g 23
Davide Risso d****2@m****u 12
Nitesh Turaga n****a@g****m 10
Herve Pages h****s@f****g 6
koenvandenberge k****e@u****e 4
Hervé Pagès h****s@f****g 2
Martin Morgan m****n@f****g 2
vobencha v****n@r****g 2
vobencha v****a@g****m 2
Kayla-Morrell k****l@r****g 1
LiNk-NY m****9@g****m 1
Sonali Arora s****a@f****g 1
Committer Domains (Top 20 + Academic)
fhcrc.org: 4 roswellpark.org: 2 fredhutch.org: 1 ugent.be: 1 med.cornell.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 15
  • Total pull requests: 1
  • Average time to close issues: 2 months
  • Average time to close pull requests: 3 months
  • Total issue authors: 11
  • Total pull request authors: 1
  • Average comments per issue: 1.2
  • Average comments per pull request: 5.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • drisso (4)
  • FrAoJm (1)
  • mikelove (1)
  • jaclynbeck-sage (1)
  • RoganGrant (1)
  • nfancy (1)
  • JieLiBio (1)
  • dwill023 (1)
  • troysgit (1)
  • mbstadler (1)
  • albptt (1)
Pull Request Authors
  • koenvandenberge (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 353,505 total
  • Total dependent packages: 12
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: EDASeq

Exploratory Data Analysis and Normalization for RNA-Seq

  • Versions: 5
  • Dependent Packages: 12
  • Dependent Repositories: 0
  • Downloads: 353,505 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 2.2%
Downloads: 6.7%
Maintainers (1)
risso.davide@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • Biobase >= 2.15.1 depends
  • ShortRead >= 1.11.42 depends
  • AnnotationDbi * imports
  • BiocGenerics * imports
  • BiocManager * imports
  • Biostrings * imports
  • GenomicFeatures * imports
  • GenomicRanges * imports
  • IRanges >= 1.13.9 imports
  • Rsamtools >= 1.5.75 imports
  • aroma.light * imports
  • biomaRt * imports
  • graphics * imports
  • methods * imports
  • BiocStyle * suggests
  • DESeq2 * suggests
  • KernSmooth * suggests
  • edgeR * suggests
  • knitr * suggests
  • leeBamViews * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • yeastRNASeq * suggests