goeveg

R-package: Functions for Community Data and Ordinations

https://github.com/fvlampe/goeveg

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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Found .zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
3 of 6 committers (50.0%) from academic institutions
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Scientific vocabulary similarity
Low similarity (6.6%) to scientific vocabulary

Last synced: 10 months ago · JSON representation

Repository

R-package: Functions for Community Data and Ordinations

Basic Info

Host: GitHub
Owner: fvlampe
Language: R
Default Branch: master
Homepage: https://cran.r-project.org/web/packages/goeveg/index.html
Size: 259 KB

Statistics

Stars: 5
Watchers: 0
Forks: 1
Open Issues: 0
Releases: 21

Created about 10 years ago · Last pushed 11 months ago

Metadata Files

Readme Changelog

README.md

goeveg R-package

Functions for Community Data and Ordinations

A collection of functions useful in vegetation community analyses and ordinations.\ The ordination functions work as an addition to the functions from the vegan-package.

Features

Automatic species selection for ordination diagrams based on cover abundances and species fit (ordiselect - function)
Generation of species response curves (specresponse - function)
Scree/stress plots for NMDS (screeplot_NMDS - function)
Rank-abundance curve plotting for single or multiple samples (racurve and racurves-functions)
Calculation and sorting of synoptic tables with group-wise frequencies, fidelity and differential species assessment (syntable and synsort functions)
Heterogeneity-constrained random (HCR) resampling (Lengyel, Chytrý & Tichý, 2011) of community data (hcr_resampling function)
Taxa merging for taxa with identical names (merge_taxa - function)
One-step cleaning and transposing of vegetation matrices: (clean_matrix and trans_matrix - functions)
Conversion between cover-abundance codes and percentage cover (cov2per and per2cov - functions)

Furthermore some basic functions are included, such as standard error of the mean sem, coefficient of variance cv or conversion between degrees and radians deg2rad/rad2deg.

Installation

Install the released version from CRAN:

r install.packages("goeveg")

Install the latest version from Github using remotes

r remotes::install_github("fvlampe/goeveg")

Owner

Name: Friedemann von Lampe
Login: fvlampe
Kind: user

Repositories: 1
Profile: https://github.com/fvlampe

GitHub Events

Total

Create event: 7
Issues event: 2
Release event: 3
Watch event: 1
Delete event: 4
Push event: 28
Pull request review event: 1
Pull request review comment event: 1
Pull request event: 11

Last Year

Create event: 7
Issues event: 2
Release event: 3
Watch event: 1
Delete event: 4
Push event: 28
Pull request review event: 1
Pull request review comment event: 1
Pull request event: 11

Committers

Last synced: over 2 years ago

All Time

Total Commits: 105
Total Committers: 6
Avg Commits per committer: 17.5
Development Distribution Score (DDS): 0.381

Past Year

Commits: 23
Committers: 1
Avg Commits per committer: 23.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Friedemann Goral	f**l@g**e	65
Friedemann von Lampe	f**e@u**e	23
unknown	F**l@U**e	9
Goral	f**l@b**e	3
JennyGoe	j**l@g**e	3
Friede	F****e	2

Committer Domains (Top 20 + Academic)

gwdg.de: 2 biologie.uni-goettingen.de: 1 ug-ubgbe00-c002.avh.bio.uni-goettingen.de: 1 uni-goettingen.de: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 4
Total pull requests: 14
Average time to close issues: 15 days
Average time to close pull requests: about 1 hour
Total issue authors: 4
Total pull request authors: 2
Average comments per issue: 2.0
Average comments per pull request: 0.07
Merged pull requests: 8
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 9
Average time to close issues: 1 day
Average time to close pull requests: 3 minutes
Issue authors: 1
Pull request authors: 1
Average comments per issue: 0.0
Average comments per pull request: 0.0
Merged pull requests: 5
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

mrismailt (1)
Mathildebd (1)
ninadesianti (1)
fvlampe (1)

Pull Request Authors

fvlampe (11)
JennyGoe (3)

Top Labels

Issue Labels

Pull Request Labels

codex (4)

Packages

Total packages: 2
Total downloads:
- cran 788 last-month

Total dependent packages: 2
(may contain duplicates)
Total dependent repositories: 1
(may contain duplicates)
Total versions: 18
Total maintainers: 1

cran.r-project.org: goeveg

Functions for Community Data and Ordinations

Homepage: https://github.com/fvlampe/goeveg
Documentation: http://cran.r-project.org/web/packages/goeveg/goeveg.pdf
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Latest release: 0.7.9
published 10 months ago

Versions: 16
Dependent Packages: 2
Dependent Repositories: 1
Downloads: 788 Last month

Rankings

Dependent packages count: 13.6%

Downloads: 14.5%

Average: 19.3%

Forks count: 21.0%

Stargazers count: 23.6%

Dependent repos count: 23.8%

Maintainers (1)

fvonlampe@uni-goettingen.de

Last synced: 10 months ago

conda-forge.org: r-goeveg

Homepage: https://github.com/fvlampe/goeveg/
License: GPL-2.0-or-later
Latest release: 0.5.1
published about 5 years ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent repos count: 34.0%

Average: 42.6%

Dependent packages count: 51.2%

Last synced: 11 months ago

Dependencies

DESCRIPTION cran

R >= 2.10 depends
Hmisc * imports
fields * imports
mgcv * imports
vegan * imports
BiodiversityR * suggests
cluster * suggests
vegdata * suggests