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heemod

Markov Models for Health Economic Evaluations

https://github.com/aphp/heemod

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
    Links to: arxiv.org
  • ○
    Committers with academic emails
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.0%) to scientific vocabulary

Keywords from Contributors

tidy-data visualisation
Last synced: 10 months ago · JSON representation

Repository

Markov Models for Health Economic Evaluations

Basic Info
Statistics
  • Stars: 16
  • Watchers: 2
  • Forks: 2
  • Open Issues: 3
  • Releases: 2
Created almost 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License

README.md

R-CMD-check <!-- badges: end -->

heemod - Health Economic Evaluation MODelling

Markov Models for Health Economic Evaluations. An implementation of the modelling and reporting features described in reference textbooks and guidelines: deterministic and probabilistic sensitivity analysis, heterogeneity analysis, time dependency on state-time and model-time (semi-Markov and non-homogeneous Markov models), etc.

You can install:

  • the latest released version from CRAN with:

r install.packages("heemod")

  • the latest development version from github with:

r devtools::install_github("aphp/heemod")

  • heemod can be cited with:

Filipović-Pierucci A, Zarca K and Durand-Zaleski I (2017). “Markov Models for Health Economic Evaluation: The R Package heemod.” ArXiv e-prints. R package version 0.8.0, 1702.03252

Features

Main features:

  • Accounting for time-dependency:
    • For both model time and state time.
    • Time-varying transition probabilities.
    • Time-varying values attached to states.
  • Probabilistic uncertainty analysis (PSA).
    • With correlated resampling.
    • Covariance analysis for PSA.
    • Expected value of perfect information (EVPI).
  • Deterministic sensitivity analysis (DSA).

Other features:

  • Multiple state membership correction methods (life-table, custom method, etc.).
  • Demographic analysis to compute population-level results.
  • Heterogeneity analysis.
  • Parallel computing support.
  • Features for budget impact analysis.
  • Interface with SAVI and BCEA.

Most of the analyses presented in Decision Modelling for Health Economic Evaluation can be performed with heemod. See the Reproducing Exact Results from DMHEE vignette for an exact reproduction of the analyses from the book.

Learning heemod

To get started read the An Introduction to heemod vignette. Specific analysis examples (mostly inspired from Decision Modelling for Health Economic Evaluation) can be found in the package vignettes.

Devs

Kevin Zarca and Antoine Filipović-Pierucci.

Contributors

Owner

  • Name: Greater Paris University Hospitals (AP-HP)
  • Login: aphp
  • Kind: organization
  • Location: Paris

GitHub Events

Total
  • Issues event: 5
  • Watch event: 6
  • Issue comment event: 3
  • Member event: 1
  • Push event: 2
  • Pull request review event: 1
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Issues event: 5
  • Watch event: 6
  • Issue comment event: 3
  • Member event: 1
  • Push event: 2
  • Pull request review event: 1
  • Pull request event: 2
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 1,023
  • Total Committers: 12
  • Avg Commits per committer: 85.25
  • Development Distribution Score (DDS): 0.216
Past Year
  • Commits: 65
  • Committers: 1
  • Avg Commits per committer: 65.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
afp p****i@g****m 802
KZARCA k****a@g****m 128
KZARCA k****t@g****m 43
MattWiener m****r@g****m 39
Jordan Amdahl j****l@g****m 3
Zdenek Kabat z****t@m****m 2
Lionel Henry l****y@g****m 1
andbe a****e@g****m 1
kevin k****n@S****r 1
afp s****g@w****r 1
Romain Francois r****n@p****t 1
Vince Daniels d****1 1
Committer Domains (Top 20 + Academic)
purrple.cat: 1 wprod.ds.aphp.fr: 1 sap9065766.wprod.ds.aphp.fr: 1 merck.com: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 17
  • Total pull requests: 1
  • Average time to close issues: 20 days
  • Average time to close pull requests: about 4 hours
  • Total issue authors: 16
  • Total pull request authors: 1
  • Average comments per issue: 3.12
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 1
  • Average time to close issues: 3 months
  • Average time to close pull requests: about 4 hours
  • Issue authors: 3
  • Pull request authors: 1
  • Average comments per issue: 1.67
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mmaughan0 (2)
  • gloriamacia (1)
  • huipharmacist (1)
  • alipour1360 (1)
  • 3stebanorozco (1)
  • cbr13032024 (1)
  • aminadibi (1)
  • c13hb (1)
  • Eva018 (1)
  • BoYang1225 (1)
  • william-rawlinson (1)
  • sw3554 (1)
  • BElifb (1)
  • Avila-Diego (1)
  • BigweiYang (1)
Pull Request Authors
  • BElifb (1)
Top Labels
Issue Labels
new-feature (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 971 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 32
  • Total maintainers: 1
cran.r-project.org: heemod

Markov Models for Health Economic Evaluations

  • Versions: 32
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 971 Last month
Rankings
Downloads: 14.7%
Stargazers count: 18.4%
Forks count: 21.3%
Average: 21.4%
Dependent repos count: 24.4%
Dependent packages count: 28.0%
Maintainers (1)
kevin.zarca@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.6.0 depends
  • dplyr >= 1.0.9 imports
  • ggplot2 >= 3.3.3 imports
  • memoise >= 2.0.0 imports
  • mvnfast >= 0.2.5 imports
  • purrr >= 0.3.4 imports
  • rlang >= 1.0.2 imports
  • tibble >= 3.0.6 imports
  • BCEA * suggests
  • cli * suggests
  • diagram * suggests
  • flexsurv * suggests
  • knitr * suggests
  • logitnorm * suggests
  • lpSolve * suggests
  • magrittr * suggests
  • mgcv * suggests
  • optimx * suggests
  • parallel * suggests
  • readxl * suggests
  • rmarkdown * suggests
  • stringr * suggests
  • survival * suggests
  • testthat * suggests
  • triangle * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite