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HGNChelper

Identify and correct invalid gene symbols

https://github.com/waldronlab/hgnchelper

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Identify and correct invalid gene symbols

Basic Info
Statistics
  • Stars: 55
  • Watchers: 7
  • Forks: 9
  • Open Issues: 6
  • Releases: 2
Created about 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

README.md

R build status DOI

HGNChelper: identification and correction of invalid gene symbols for human and mouse

Please cite our software:

Oh S, Abdelnabi J, Al-Dulaimi R et al. HGNChelper: identification and correction of invalid gene symbols for human and mouse. F1000Research 2020, 9:1493 (https://doi.org/10.12688/f1000research.28033.1)

Updating

To update the symbols maps for human and mouse yourself, download this repository and run:

./update.sh

from its root directory. Note that this script uses the "roxygen2" R library to update the documentation.

Alternatively, you can use updated maps without updating the package, see ?getCurrentMaps.

Owner

  • Name: Waldron Lab at the CUNY SPH
  • Login: waldronlab
  • Kind: organization
  • Email: Levi.Waldron@sph.cuny.edu
  • Location: New York, NY, USA

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

GitHub Events

Total
  • Create event: 2
  • Release event: 1
  • Issues event: 3
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 3
  • Push event: 8
  • Pull request event: 2
Last Year
  • Create event: 2
  • Release event: 1
  • Issues event: 3
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 3
  • Push event: 8
  • Pull request event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 122
  • Total Committers: 4
  • Avg Commits per committer: 30.5
  • Development Distribution Score (DDS): 0.41
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Levi Waldron l****h@g****m 72
Sehyun Oh s****f@h****m 26
Ayush Aggarwal a****3@g****m 22
Ayush Aggarwal 5****h@u****m 2

Issues and Pull Requests

Last synced: over 2 years ago

All Time
  • Total issues: 14
  • Total pull requests: 5
  • Average time to close issues: 3 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 7
  • Total pull request authors: 1
  • Average comments per issue: 2.29
  • Average comments per pull request: 3.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 0.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lwaldron (8)
  • LiNk-NY (2)
  • kcs3 (1)
  • bug1303 (1)
  • kaizen89 (1)
  • lincj1994 (1)
  • Aggarwal-Ayush (1)
  • iivario (1)
Pull Request Authors
  • Aggarwal-Ayush (5)
  • LiNk-NY (1)
Top Labels
Issue Labels
enhancement (3) question (1) help wanted (1) bug (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 2,307 last-month
  • Total docker downloads: 43,624
  • Total dependent packages: 2
    (may contain duplicates)
  • Total dependent repositories: 12
    (may contain duplicates)
  • Total versions: 16
  • Total maintainers: 1
cran.r-project.org: HGNChelper

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

  • Versions: 15
  • Dependent Packages: 2
  • Dependent Repositories: 12
  • Downloads: 2,307 Last month
  • Docker Downloads: 43,624
Rankings
Stargazers count: 7.2%
Forks count: 7.9%
Dependent repos count: 8.3%
Downloads: 12.0%
Average: 12.5%
Dependent packages count: 13.7%
Docker downloads count: 25.8%
Maintainers (1)
lwaldron.research@gmail.com
Last synced: 11 months ago
conda-forge.org: r-hgnchelper
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Stargazers count: 38.8%
Average: 41.9%
Forks count: 43.4%
Dependent packages count: 51.2%
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • methods * depends
  • utils * depends
  • splitstackshape * imports
  • knitr * suggests
  • markdown * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r master composite
.github/workflows/pkgdown.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite