Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 14 committers (14.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.9%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
timereg R package, survival analysis methods
Basic Info
- Host: GitHub
- Owner: scheike
- Language: R
- Default Branch: master
- Size: 11.4 MB
Statistics
- Stars: 33
- Watchers: 2
- Forks: 5
- Open Issues: 8
- Releases: 0
Created about 11 years ago
· Last pushed 11 months ago
Metadata Files
Readme
README.org
* Timereg for Event Times (=timereg=)
Additive survival model, semiparametric proportional odds model,
cumulative residuals, excess risk models and more.
Flexible competing risks regression including GOF-tests.
Two-stage frailty modelling. PLS for the additive risk model.
Additive hazard Lasso in the 'ahaz' package for high-dimensional data.
mets package has a collection of tools for multivariate data.
Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag.
** Installation
#+BEGIN_SRC R :exports both :eval never
install.packages("timereg",dependencies=TRUE)
#+END_SRC
The development version may be installed directly from github
(requires [[http://cran.r-project.org/bin/windows/Rtools/][Rtools]] on windows
and [[http://cran.r-project.org/bin/macosx/tools/][development tools]] (+Xcode) for Mac OS X):
#+BEGIN_SRC R :exports both :eval never
devtools::install_github("scheike/timereg")
#+END_SRC
or download the source
#+BEGIN_EXAMPLE
git@github.com:scheike/timereg
#+END_EXAMPLE
** Citation
To cite the =timereg= package please use one of the following references
#+BEGIN_QUOTE
Thomas H. Scheike, Torben Martinussen (2006),
Dynamic Regression models for survival data.
Springer, New-York
#+END_QUOTE
#+BEGIN_QUOTE
"Thomas H. Scheike, Mei-Jie Zhang (2011)."
"Analyzing Competing Risk Data Using the R timereg Package."
"Journal of Statistical Software, 38(2), 1-15."
"URL http://www.jstatsoft.org/v38/i02/."
#+END_QUOTE
#+BEGIN_QUOTE
#+END_QUOTE
BibTeX:
#+BEGIN_EXAMPLE
@Book{ms06,
title = {Dynamic Regression Models for Survival Data},
publisher = {Springer-Verlag New York},
year = {2006},
author = {T. Martinussen and T.H. Scheike},
}
@Article{ts-mz-jss-2010,
author = {Scheike, T. H. and Mei-Jie Zhang},
title = {Modelling competing risks data using the {R}-timereg package},
journal = {Journal of Statistical Software},
year = {2011},
volume = {38},
pages = {1-15},
}
#+END_EXAMPLE
** Examples
#+BEGIN_SRC R :exports both :file timereg1.png :cache yes
library(timereg)
example(aalen)
example(cox.aalen)
example(comp.risk)
example(two.stage)
example(restricted.residual.mean)
#+END_SRC
:RESULTS:
[[file:inst/timereg1.png]]
:END:
Owner
- Login: scheike
- Kind: user
- Repositories: 2
- Profile: https://github.com/scheike
GitHub Events
Total
- Issues event: 2
- Watch event: 4
- Push event: 3
Last Year
- Issues event: 2
- Watch event: 4
- Push event: 3
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| scheike | s****e@e****d | 358 |
| Thomas Scheike | ts@b****k | 165 |
| tag | t****g@e****d | 40 |
| Jakson Alves de Aquino | j****q@g****m | 32 |
| tagteam | t****m@e****d | 11 |
| Pete | e****0@g****m | 4 |
| Thomas Alexander Gerds | t****g@b****k | 3 |
| Alok Singh | A****k@u****m | 3 |
| Rad Cirskis | n****0@g****m | 3 |
| chee | c****e@s****g | 2 |
| klaus | k****s@e****d | 2 |
| Anders Kiel Hovgaard | a****g@g****m | 1 |
| Ian Liu Rodrigues | i****8@g****m | 1 |
| Kevin | k****e@u****m | 1 |
Committer Domains (Top 20 + Academic)
biostat.ku.dk: 2
snaek.org: 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 11
- Total pull requests: 0
- Average time to close issues: about 1 month
- Average time to close pull requests: N/A
- Total issue authors: 10
- Total pull request authors: 0
- Average comments per issue: 0.91
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- spenafajuri (2)
- mehlkopf (1)
- shirleydaidai (1)
- boennecd (1)
- alexploner (1)
- mclements (1)
- jenifferYingyiWu (1)
- sophiewagner7 (1)
- rdboyes (1)
- rborder (1)
- acmilannesta (1)
Pull Request Authors
- kkholst (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
-
Total downloads:
- cran 10,395 last-month
- Total docker downloads: 48,142
-
Total dependent packages: 15
(may contain duplicates) -
Total dependent repositories: 20
(may contain duplicates) - Total versions: 73
- Total maintainers: 1
cran.r-project.org: timereg
Flexible Regression Models for Survival Data
- Homepage: https://github.com/scheike/timereg
- Documentation: http://cran.r-project.org/web/packages/timereg/timereg.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
-
Latest release: 2.0.7
published 11 months ago
Rankings
Downloads: 3.7%
Dependent packages count: 4.6%
Dependent repos count: 6.3%
Average: 9.9%
Stargazers count: 10.3%
Forks count: 12.2%
Docker downloads count: 22.6%
Maintainers (1)
Last synced:
11 months ago
conda-forge.org: r-timereg
- Homepage: https://github.com/scheike/timereg
- License: GPL-2.0-or-later
-
Latest release: 2.0.4
published over 3 years ago
Rankings
Dependent packages count: 15.6%
Dependent repos count: 34.0%
Average: 35.8%
Stargazers count: 44.2%
Forks count: 49.6%
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 2.15 depends
- survival * depends
- grDevices * imports
- graphics * imports
- lava * imports
- methods * imports
- numDeriv * imports
- stats * imports
- utils * imports
- mets * suggests
.github/workflows/r-check.yml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/r2.yml
actions
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-tinytex v2 composite