Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Repository
Multiscale embedded gene co-expression network analysis
Basic Info
- Host: GitHub
- Owner: songw01
- License: gpl-3.0
- Language: HTML
- Default Branch: master
- Size: 10.2 MB
Statistics
- Stars: 44
- Watchers: 1
- Forks: 17
- Open Issues: 15
- Releases: 0
Metadata Files
README.md
MEGENA
Multiscale embedded gene co-expression network analysis
This is a routine MEGENA pipeline description encompassing from data correlation analysis to module plotting, and is based on version 1.3.6 https://CRAN.R-project.org/package=MEGENA.Please cite the paper below when MEGENA is applied as part of your analysis:
Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expression Network Analysis. PLoS Comput Biol 11(11): e1004574. doi: 10.1371/journal.pcbi.1004574.
For statistical mechanics aspects involved in MEGENA, please check:
Song W.-M., Di Matteo T.and Aste T., Building Complex Networks with Platonic Solids, Physical Reivew E, 2012 Apr;85(4 Pt 2):046115.
For installation for developmental github version:
library(devtools);
install_github("songw01/MEGENA");
Owner
- Login: songw01
- Kind: user
- Repositories: 2
- Profile: https://github.com/songw01
GitHub Events
Total
- Issues event: 1
- Watch event: 4
- Issue comment event: 2
Last Year
- Issues event: 1
- Watch event: 4
- Issue comment event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| songw01 | w****4@g****m | 33 |
| Song | w****g@m****u | 3 |
| Minghui | m****g@l****m | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- cran 291 last-month
- Total docker downloads: 7
- Total dependent packages: 2
- Total dependent repositories: 2
- Total versions: 5
- Total maintainers: 1
cran.r-project.org: MEGENA
Multiscale Clustering of Geometrical Network
- Homepage: https://github.com/songw01/MEGENA
- Documentation: http://cran.r-project.org/web/packages/MEGENA/MEGENA.pdf
- License: GPL (≥ 3)
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Latest release: 1.3.7
published almost 8 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.6.0 depends
- doParallel >= 1.0.16 depends
- foreach >= 1.5.1 depends
- igraph >= 1.2.6 depends
- Matrix >= 1.2 imports
- Rcpp >= 1.0.5 imports
- cluster >= 2.0.7 imports
- fpc >= 2.1 imports
- ggplot2 >= 3.3.5 imports
- ggraph >= 2.0.0 imports
- ggrepel >= 0.9.1 imports
- impute >= 1.58.0 imports
- reshape >= 0.8.5 imports
- knitr * suggests
- rmarkdown * suggests