rdiversity
rdiversity - An R package for measuring similarity-sensitive diversity
Science Score: 33.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: arxiv.org, zenodo.org -
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.7%) to scientific vocabulary
Keywords
Repository
rdiversity - An R package for measuring similarity-sensitive diversity
Basic Info
- Host: GitHub
- Owner: boydorr
- Language: R
- Default Branch: main
- Homepage: http://boydorr.github.io/rdiversity/
- Size: 1.81 MB
Statistics
- Stars: 8
- Watchers: 3
- Forks: 3
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
rdiversity: diversity measurement in R
rdiversity is a package for R based around a framework for measuring biodiversity using similarity-sensitive diversity measures. It provides functionality for measuring alpha, beta and gamma diversity of metacommunities (e.g. ecosystems) and their constituent subcommunities, where similarity may be defined as taxonomic, phenotypic, genetic, phylogenetic, functional, and so on. It uses the diversity framework described in the arXiv paper arXiv:1404.6520 (q-bio.QM), "How to partition diversity".
This package has now reached a stable release and is cross-validated against our Julia package Diversity.jl, which is developed independently. Please raise an issue if you find any problems.
To install rdiversity from CRAN, simply run the following from an R console:
{r}
install.packages("rdiversity")
The latest development version can be installed from GitHub: ```{r]
install.packages("devtools")
devtools::install_github("boydorr/rdiversity") ```
Examples of how to use the package are included in our docs, as well as in a vignette currently only available in the development version of this package:
{r}
install_github("boydorr/rdiversity", build_vignettes = TRUE)
vignette("examples", "rdiversity")
Owner
- Name: Boyd Orr
- Login: boydorr
- Kind: organization
- Location: Glasgow, UK
- Website: http://www.gla.ac.uk/boydorr
- Repositories: 28
- Profile: https://github.com/boydorr
Boyd Orr Centre for Population and Ecosystem Health, University of Glasgow
GitHub Events
Total
- Watch event: 1
- Pull request event: 1
- Create event: 1
Last Year
- Watch event: 1
- Pull request event: 1
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| mysteryduck | s****2@r****k | 1,281 |
| Richard Reeve | g****t@r****t | 45 |
| TomJamesW | w****s@g****m | 13 |
| Sonia Mitchell | m****k | 3 |
| The Codacy Badger | b****r@c****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 4
- Total pull requests: 12
- Average time to close issues: 14 days
- Average time to close pull requests: about 1 month
- Total issue authors: 3
- Total pull request authors: 4
- Average comments per issue: 3.5
- Average comments per pull request: 1.17
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- richardreeve (2)
- KatharinaKordubel (1)
- soniamitchell (1)
Pull Request Authors
- richardreeve (8)
- soniamitchell (3)
- codacy-badger (1)
- TomJamesW (1)
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Packages
- Total packages: 1
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Total downloads:
- cran 296 last-month
- Total dependent packages: 1
- Total dependent repositories: 2
- Total versions: 5
- Total maintainers: 1
cran.r-project.org: rdiversity
Measurement and Partitioning of Similarity-Sensitive Biodiversity
- Homepage: https://github.com/boydorr/rdiversity
- Documentation: http://cran.r-project.org/web/packages/rdiversity/rdiversity.pdf
- License: GPL-3
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Latest release: 2.2.0
published about 4 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.10 depends
- methods * imports
- reshape2 * imports
- stats * imports
- stringdist * imports
- utils * imports
- ape * suggests
- covr * suggests
- knitr * suggests
- markdown * suggests
- rmarkdown * suggests
- testthat * suggests