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rglobi

R library to access species interaction data of http://globalbioticinteractions.org

https://github.com/ropensci/rglobi

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 13 committers (15.4%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.2%) to scientific vocabulary

Keywords

r r-package rstats

Keywords from Contributors

genome bicycle-hire bicycle-hire-systems bike-data ebird bike-hire species spocc parasites helminth
Last synced: 10 months ago · JSON representation

Repository

R library to access species interaction data of http://globalbioticinteractions.org

Basic Info
Statistics
  • Stars: 18
  • Watchers: 10
  • Forks: 10
  • Open Issues: 5
  • Releases: 21
Topics
r r-package rstats
Created about 12 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License

README.md

'rglobi'

R library to access species interaction data of http://globalbioticinteractions.org

R-check rstudio mirror downloads cran version

install

To install rglobi from CRAN: R install.packages("rglobi")

Or install development version: R install.packages("devtools") devtools::install_github("ropensci/rglobi")

examples

```R library(rglobi)

find all unique prey names of Homo sapiens

preyof("Homo sapiens")$targettaxon_name

is a shortcut of

getinteractionsbytaxa(sourcetaxon='Homo sapiens', interactiontype='preysOn')$targettaxon_name

list of supported interactions types

getinteractiontypes()

all known prey names and locations (latitude, longitude) where birds (Aves) preyed on rodents (Rodentia) in California

obs <- getinteractionsbytaxa(sourcetaxon = "Aves", bbox=c(-125.53344800000002,32.750323,-114.74487299999998,41.574361), targettaxon = "Rodentia", returnobservations=TRUE) locations <- cbind(obs$targettaxonname, obs$latitude, obs$longitude) Please see R help pages (e.g.?getinteractionsbytaxa``` and vignettes for more information.

tests

Tests can be executed using devtools package. ```R

workdir should be rglobi repo root directory (check with getwd())

install dependencies

devtools::install('.') devtools::test() ``` This should reload the library, executes the test_that testcases and show test reports.

documentation

roxygen2 is used to generate .Rd and NAMESPACE by running: R library(roxygen2) roxygenize(".")

Vignettes are generated using knitr and markdown packages.

meta

Please report any issues or bugs.

This package is part of the rOpenSci project.

rOpenSci footer

Owner

  • Name: rOpenSci
  • Login: ropensci
  • Kind: organization
  • Email: info@ropensci.org
  • Location: Berkeley, CA

GitHub Events

Total
  • Issues event: 1
  • Watch event: 3
  • Delete event: 1
  • Issue comment event: 6
  • Push event: 1
  • Pull request event: 1
Last Year
  • Issues event: 1
  • Watch event: 3
  • Delete event: 1
  • Issue comment event: 6
  • Push event: 1
  • Pull request event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 294
  • Total Committers: 13
  • Avg Commits per committer: 22.615
  • Development Distribution Score (DDS): 0.531
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Jorrit Poelen j****n@g****m 138
jhpoelen j****n@x****l 82
Jorrit Poelen j****t@j****l 27
J. Stephen Gosnell s****l@g****m 22
Sergey Slyusarev c****y@g****m 12
Scott Chamberlain m****s@g****m 3
H-Waters h****s@e****k 3
steven2249 s****w@b****u 2
mark padgham m****m@e****m 1
Maëlle Salmon m****n@y****e 1
Jim Hester j****r@g****m 1
unknown s****l@A****l 1
rOpenSci Bot m****t@g****m 1
Committer Domains (Top 20 + Academic)
email.com: 1 berkeley.edu: 1 ed.ac.uk: 1 jhpoelen.nl: 1 xs4all.nl: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 37
  • Total pull requests: 16
  • Average time to close issues: 7 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 17
  • Total pull request authors: 8
  • Average comments per issue: 3.65
  • Average comments per pull request: 1.0
  • Merged pull requests: 15
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: 5 months
  • Average time to close pull requests: 5 months
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 3.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jhpoelen (15)
  • SagarAdhurya (3)
  • sckott (3)
  • jebyrnes (2)
  • mabarbour (1)
  • amynang (1)
  • jsimons9 (1)
  • jeroen (1)
  • bonushenricus (1)
  • ZekeMarshall (1)
  • hadley (1)
  • pozsgaig (1)
  • alexharkess (1)
  • jemmybutton (1)
  • camainsworth (1)
Pull Request Authors
  • jemmybutton (6)
  • sckott (3)
  • maelle (2)
  • H-Waters (1)
  • jimhester (1)
  • mpadge (1)
  • jhpoelen (1)
  • stevenysw (1)
Top Labels
Issue Labels
help wanted (3) enhancement (3)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 301 last-month
  • Total docker downloads: 88,618
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 21
  • Total maintainers: 1
cran.r-project.org: rglobi

Interface to Global Biotic Interactions

  • Versions: 21
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 301 Last month
  • Docker Downloads: 88,618
Rankings
Docker downloads count: 0.0%
Forks count: 6.9%
Stargazers count: 14.2%
Average: 17.4%
Dependent repos count: 24.2%
Dependent packages count: 29.0%
Downloads: 30.1%
Maintainers (1)
jhpoelen@jhpoelen.nl
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.0.1 depends
  • RCurl >= 0.3.4 imports
  • curl >= 0.3.3 imports
  • readr >= 1.3.1 imports
  • rjson >= 0.2.13 imports
  • httr * suggests
  • knitr * suggests
  • markdown * suggests
  • openssl * suggests
  • testthat >= 0.7 suggests