vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 36 committers (13.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.0%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Basic Info
- Host: GitHub
- Owner: vegandevs
- License: gpl-2.0
- Language: R
- Default Branch: master
- Homepage: https://vegandevs.github.io/vegan/
- Size: 523 MB
Statistics
- Stars: 495
- Watchers: 35
- Forks: 102
- Open Issues: 31
- Releases: 24
Topics
Metadata Files
README.md
vegan: an R package for community ecologists
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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Website for the development version of the vegan package.
Vignettes are available on R-universe
- Introduction to ordination in vegan
- Partition of Variation
- Diversity analysis in vegan
- Design decisions and implementation
- vegan FAQ
Installation
To install the development version of vegan you can use the usual git and R CMD build -> R CMD INSTALL dance on the cloned repo (or downloaded sources). You'll need to be able to install packages from source for that to work; if you don't have the relevant developer tools, you won't be able to install vegan this way.
Using remotes
If you do have the developer tools installed but don't want the hassle of keeping a local source code tree up-to-date, use the remotes package:
r
install.packages("remotes")
remotes::install_github("vegandevs/vegan")
Installing binaries from R Universe
If you just want to install a binary version of the packages, just as you would from CRAN, you can install from our R Universe repository. Run the following in your R session:
r
install.packages('vegan',
repos = c('https://vegandevs.r-universe.dev','https://cloud.r-project.org'))
Owner
- Name: vegandevs
- Login: vegandevs
- Kind: organization
- Repositories: 4
- Profile: https://github.com/vegandevs
GitHub Events
Total
- Create event: 5
- Release event: 2
- Issues event: 75
- Watch event: 38
- Issue comment event: 111
- Push event: 151
- Pull request review comment event: 59
- Pull request review event: 30
- Pull request event: 5
- Fork event: 8
Last Year
- Create event: 5
- Release event: 2
- Issues event: 75
- Watch event: 38
- Issue comment event: 111
- Push event: 151
- Pull request review comment event: 59
- Pull request review event: 30
- Pull request event: 5
- Fork event: 8
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jari Oksanen | j****n@o****i | 2,382 |
| jarioksa | j****a@e****b | 1,441 |
| Gavin Simpson | u****s@g****m | 268 |
| psolymos | p****s@e****b | 175 |
| gsimpson | g****n@e****b | 99 |
| Peter Solymos | p****s@g****m | 48 |
| edisz | s****2@u****e | 37 |
| antagomir | l****i@i****i | 25 |
| Geoffrey Hannigan | g****i@u****u | 16 |
| James Weedon | j****n@g****m | 14 |
| edisz | e****s@g****m | 12 |
| Dan McGlinn | d****n@g****m | 6 |
| Michael Chirico | c****m@g****m | 6 |
| gblanchet | g****t@e****b | 6 |
| becarioprecario | b****o@g****m | 5 |
| Pierre Legendre | p****e@u****a | 3 |
| Virgilio Gomez Rubio | v****l@j****s | 3 |
| Zhilong Jia | z****a@g****m | 3 |
| Ben Bolker | b****r@g****m | 2 |
| Gavin | g****n@h****a | 2 |
| Hannigan, Geoffrey | g****n@m****m | 2 |
| Michael Friendly | f****y@y****a | 2 |
| hankstevens | h****s@e****b | 2 |
| Adrian Stier | a****r@g****m | 1 |
| Daniel Borcard | d****d@g****m | 1 |
| Henrik Bengtsson | hb@a****g | 1 |
| Kasper Skytte Andersen | k****t@g****m | 1 |
| Matt Barbour | b****r@z****a | 1 |
| Salix | 3****d | 1 |
| Rich FitzJohn | r****n@g****m | 1 |
| and 6 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 201
- Total pull requests: 35
- Average time to close issues: 12 months
- Average time to close pull requests: 4 months
- Total issue authors: 146
- Total pull request authors: 11
- Average comments per issue: 3.27
- Average comments per pull request: 4.17
- Merged pull requests: 28
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 32
- Pull requests: 5
- Average time to close issues: 11 days
- Average time to close pull requests: 3 days
- Issue authors: 26
- Pull request authors: 3
- Average comments per issue: 1.16
- Average comments per pull request: 5.2
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jarioksa (24)
- gavinsimpson (10)
- aguilart (5)
- pauGuas (5)
- lshlsh109 (3)
- antagomir (3)
- LaFra7 (3)
- fvlampe (2)
- melissaszy (2)
- eggxo (2)
- TuomasBorman (2)
- marwa38 (2)
- TJrogers86 (2)
- telenskyt (2)
- nick-youngblut (2)
Pull Request Authors
- antagomir (7)
- gavinsimpson (6)
- olivroy (5)
- TuomasBorman (4)
- MichaelChirico (4)
- jarioksa (3)
- fpusan (2)
- jebyrnes (1)
- fkeck (1)
- salix-d (1)
- zhilongjia (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 75,204 last-month
- Total docker downloads: 966,380
- Total dependent packages: 218
- Total dependent repositories: 563
- Total versions: 92
- Total maintainers: 1
cran.r-project.org: vegan
Community Ecology Package
- Homepage: https://vegandevs.github.io/vegan/
- Documentation: http://cran.r-project.org/web/packages/vegan/vegan.pdf
- License: GPL-2
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Latest release: 2.7-1
published 12 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.4.0 depends
- lattice * depends
- permute >= 0.9 depends
- MASS * imports
- cluster * imports
- mgcv * imports
- knitr * suggests
- markdown * suggests
- parallel * suggests
- tcltk * suggests
- actions/checkout v2 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- r-lib/actions/setup-tinytex v2 composite
- JamesIves/github-pages-deploy-action 4.1.4 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite