Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (11.0%) to scientific vocabulary
Keywords
Repository
SPUTNIK R package
Basic Info
- Host: GitHub
- Owner: piplus2
- License: lgpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://paoloinglese.github.io/SPUTNIK/
- Size: 8.36 MB
Statistics
- Stars: 4
- Watchers: 5
- Forks: 3
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
SPUTNIK: an R package for peak selection of Mass spectrometry imaging data
If you find SPUTNIK useful, please consider citing our work :)
Description
SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results.
Contact
- issues and bug reports: https://github.com/paoloinglese/SPUTNIK/issues
- pull requests: https://github.com/paoloinglese/SPUTNIK/pulls
- email contact: p.inglese at outlook.com
Install from CRAN
To install the CRAN package, run the command:
install.packages("SPUTNIK")
Install from source
To install it, run the command:
devtools::install_git("https://github.com/paoloinglese/SPUTNIK.git")
Example SPUTNIK workflow on MALDI mass spectrometry imaging data
https://paoloinglese.github.io/SPUTNIK/
Example data
Two mass spectrometry imaging datasets in RData format are available in a separate repository:
https://github.com/paoloinglese/SPUTNIKexamples
Owner
- Name: Paolo Inglese
- Login: piplus2
- Kind: user
- Location: Genova
- Company: Istituto Italiano di Tecnologia
- Repositories: 4
- Profile: https://github.com/piplus2
GitHub Events
Total
- Issues event: 4
- Watch event: 1
- Push event: 2
Last Year
- Issues event: 4
- Watch event: 1
- Push event: 2
Packages
- Total packages: 1
-
Total downloads:
- cran 281 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 20
- Total maintainers: 1
cran.r-project.org: SPUTNIK
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit
- Homepage: https://github.com/piplus2/SPUTNIK
- Documentation: http://cran.r-project.org/web/packages/SPUTNIK/SPUTNIK.pdf
- License: GPL (≥ 3)
- Status: removed
-
Latest release: 1.4.3
published 12 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.4.0 depends
- doSNOW * imports
- e1071 * imports
- edgeR * imports
- foreach * imports
- ggplot2 * imports
- imager * imports
- infotheo * imports
- irlba * imports
- methods * imports
- parallel * imports
- reshape * imports
- spatstat * imports
- spatstat.core * imports
- spatstat.data * imports
- spatstat.geom * imports
- spatstat.linnet * imports
- spatstat.sparse * imports
- spatstat.utils * imports
- testthat * imports
- viridis * imports