Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
✓Academic publication links
Links to: mdpi.com -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.8%) to scientific vocabulary
Repository
Prediction of signal peptides
Basic Info
- Host: GitHub
- Owner: michbur
- Language: R
- Default Branch: master
- Size: 3.62 MB
Statistics
- Stars: 2
- Watchers: 2
- Forks: 0
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
Predict Presence of Signal Peptides
signalHsmm predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service http://smorfland.uni.wroc.pl/shiny/signalHsmm/.
Local instance of signalHsmm
signalHsmm can be also used locally as the R package. It can be installed from CRAN using:
R
install.packages("signalHsmm")
You can install the latest development version of the package directly from github:
R
source("https://install-github.me/michbur/signalHsmm")
After the installation, the GUI can be accessed locally:
R
library(signalHsmm)
gui_signalHsmm()
All signalHsmm functionalities can be also invoked in the batch mode, for example:
R
run_signalHsmm(benchmark_dat[1:10])
Citation
Plain text
Burdukiewicz M, Sobczyk P, Chilimoniuk J, Gagat P, Mackiewicz P. Prediction of Signal Peptides in Proteins from Malaria Parasites. International Journal of Molecular Sciences. 2018; 19(12):3709.
Publication
BibTeX
@article{Burdukiewicz_2018, title={Prediction of Signal Peptides in Proteins from Malaria Parasites}, volume={19}, ISSN={1422-0067}, url={http://dx.doi.org/10.3390/ijms19123709}, DOI={10.3390/ijms19123709}, number={12}, journal={International Journal of Molecular Sciences}, publisher={MDPI AG}, author={Burdukiewicz, Michał and Sobczyk, Piotr and Chilimoniuk, Jarosław and Gagat, Przemysław and Mackiewicz, Paweł}, year={2018}, month={Nov}, pages={3709}}
Owner
- Name: Michał Burdukiewicz
- Login: michbur
- Kind: user
- Location: Białystok, Poland
- Website: biogenies.info
- Twitter: burdukiewicz
- Repositories: 240
- Profile: https://github.com/michbur
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| michbur | m****z@g****m | 151 |
| Piotr Sobczyk | s****o@g****m | 14 |
| jarochi | j****k@g****m | 10 |
| Oliver Keyes | I****s | 1 |
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 2
- Total pull requests: 1
- Average time to close issues: about 1 hour
- Average time to close pull requests: about 1 hour
- Total issue authors: 2
- Total pull request authors: 1
- Average comments per issue: 1.5
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: about 1 hour
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Rohit-Satyam (1)
- babsmair (1)
Pull Request Authors
- Ironholds (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 212 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 3
- Total maintainers: 1
cran.r-project.org: signalHsmm
Predict Presence of Signal Peptides
- Homepage: https://github.com/michbur/signalhsmm
- Documentation: http://cran.r-project.org/web/packages/signalHsmm/signalHsmm.pdf
- License: GPL-3
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Latest release: 1.5
published over 7 years ago