Science Score: 59.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: wiley.com -
✓Committers with academic emails
9 of 25 committers (36.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.0%) to scientific vocabulary
Repository
Phylogenetic ANalyses of DiversificAtion
Basic Info
- Host: GitHub
- Owner: hmorlon
- Language: R
- Default Branch: master
- Size: 112 MB
Statistics
- Stars: 24
- Watchers: 14
- Forks: 15
- Open Issues: 8
- Releases: 0
Metadata Files
README.md
RPANDA
R: Phylogenetic ANalyses of DiversificAtion
Implements fits of diversification and phenotypic evolution models to phylogenetic data. See Morlon et al. PLoSB (2010), Morlon et al. PNAS (2011), Condamine et al. Eco Lett (2013), Morlon et al. Eco Lett (2014), Manceau et al. Eco Lett (2015), Lewitus & Morlon Syst Biol (2016), Drury et al. Syst Biol (2016), Manceau et al. Syst Biol (2016), Clavel & Morlon PNAS (2017), Drury et al. Syst Biol (2017), Lewitus & Morlon Syst Biol (2017), Drury et al. PLoSB (2018), Clavel et al. Syst Biol (2019), Maliet et al. Nature Ecol Evol (2019), Condamine et al. Eco Lett (2019), Aristide & Morlon Eco Lett (2019), Billaud et al. Syst Biol (2019), Lewitus & Morlon Syst Biol (2019), Maliet et al. Eco Lett (2020), Drury et al. PloS B (2021), Perez-Lamarque & Morlon Mol Ecol (2022), Perez-Lamarque et al. Peer Comm J (2022), Mazet et al. Methods Ecol Evol (2023), Drury et al. Current Bio (2024).
More information on the RPANDA package and worked examples can be found in Morlon et al. (2016)
The current stable version of the RPANDA package (2.2) is available on the CRAN repository. https://cran.r-project.org/package=RPANDA
Package Installation
From gitHub You can install RPANDA directly from gitHub with devtools:
``` library(devtools)
install_github("hmorlon/PANDA", dependencies = TRUE)
```
From the binaries
You can download the pre-released binaries for Windows and Mac OS X from the release page
From the source
Otherwise, you can install it directly from the source. Download the RPANDA folder and then, from the terminal console (linux, windows or mac):
R CMD build RPANDA
This will produce the RPANDA tarball.
Then, for compiling the binary:
R CMD INSTALL --build RPANDA_2.X.tar.gz
Report an issue
Any bugs encountered when using the package can be reported here
Owner
- Login: hmorlon
- Kind: user
- Repositories: 2
- Profile: https://github.com/hmorlon
GitHub Events
Total
- Issues event: 3
- Issue comment event: 5
- Push event: 62
Last Year
- Issues event: 3
- Issue comment event: 5
- Push event: 62
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Benoît Perez-Lamarque | b****e@g****m | 186 |
| hmorlon | m****e@g****m | 177 |
| Helene Morlon | m****n@b****r | 160 |
| Jonathan Drury | j****y@g****m | 156 |
| Sofiane HADDAD | s****d@y****r | 105 |
| Eric Lewitus | l****s@b****r | 88 |
| Clavel Julien | j****l@h****r | 79 |
| elewitus | e****s | 65 |
| Denis Barbier | b****r@i****r | 46 |
| mmanceau | m****u@g****m | 31 |
| Odile Maliet | m****t@b****r | 28 |
| Leandro Aristide | l****i@g****m | 22 |
| Louis Blanchard | b****d@i****r | 9 |
| Denis Barbier | b****m@g****m | 8 |
| olivierbillaud | 4****d | 5 |
| Odile Maliet | o****t@o****r | 4 |
| richelbilderbeek | r****l@r****l | 3 |
| JClavel | j****l@i****r | 2 |
| Julien Clavel | j****5@l****l | 2 |
| JClavel | j****l@p****r | 2 |
| Benoît Perez-Lamarque | 4****e | 2 |
| JClavel | j****l@i****r | 2 |
| Alex Slavenko | 4****a | 1 |
| Hollister Herhold | h****d@a****g | 1 |
| JClavel | j****l@i****r | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 34
- Total pull requests: 19
- Average time to close issues: 6 months
- Average time to close pull requests: 5 months
- Total issue authors: 23
- Total pull request authors: 10
- Average comments per issue: 2.44
- Average comments per pull request: 0.32
- Merged pull requests: 13
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: about 1 month
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 5.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- richelbilderbeek (3)
- Cactusolo (3)
- pwkooij (3)
- carolinagonzaleze (2)
- dylanHco (2)
- alexsla (2)
- RhettRautsaw (2)
- SimonGreenhill (1)
- stiatragul (1)
- melisaolave (1)
- hmorlon (1)
- psathyrella (1)
- BH-Lab (1)
- KaterynPino (1)
- alvarezalicia (1)
Pull Request Authors
- JClavel (4)
- SimonGreenhill (4)
- BPerezLamarque (3)
- hmorlon (2)
- laristide (2)
- richelbilderbeek (1)
- TheoPannetier (1)
- adtserapio (1)
- hherhold (1)
- Cxiaona (1)
- alexsla (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 531 last-month
- Total dependent packages: 2
- Total dependent repositories: 3
- Total versions: 15
- Total maintainers: 1
cran.r-project.org: RPANDA
Phylogenetic ANalyses of DiversificAtion
- Homepage: https://github.com/hmorlon/PANDA
- Documentation: http://cran.r-project.org/web/packages/RPANDA/RPANDA.pdf
- License: GPL-2
-
Latest release: 2.4
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.14.2 depends
- ape * depends
- methods * depends
- picante * depends
- Matrix * imports
- Rmpfr * imports
- TESS * imports
- bipartite * imports
- cluster * imports
- coda * imports
- deSolve * imports
- fields * imports
- fpc * imports
- glassoFast * imports
- grDevices * imports
- graphics * imports
- igraph * imports
- mvMORPH >= 1.1.6 imports
- parallel * imports
- phytools * imports
- pspline * imports
- pvclust * imports
- raster * imports
- stats * imports
- utils * imports
- testthat * suggests