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ridigbio

ridigbio -- an R interface to iDigBio's API (see http://www.idigbio.org/)

https://github.com/idigbio/ridigbio

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 8 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

ridigbio -- an R interface to iDigBio's API (see http://www.idigbio.org/)

Basic Info
Statistics
  • Stars: 17
  • Watchers: 11
  • Forks: 10
  • Open Issues: 9
  • Releases: 15
Created over 11 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

ridigbio

Build Status

ridigbio is an R package to access iDigBio (Integrated Digitized Biocollections).

Installation

ridigbio is avaliable via CRAN.

r install.packages("ridigbio")

Error Messages

If R says the package is unavailable, you may not have set a CRAN mirror. You can do so with:

r chooseCRANmirror()

If R says that a binary package is not available, your version of R may be too old. Please review the versions of R that CRAN has built packages for on the CRAN ridigbio package page.

You can download the source package and install manually if there is no package built for your version of R. You may also need to install any dependencies.

r install.packages("ridigbio", type="source")

On Linux, you may encounter an error during the installation process if you do not have libcurl installed. The method for installing libcurl will vary between distributions, but on Ubuntu you can install the latest version via:

sudo apt install libcurl4

Getting Started

There are several articles that can help get you started:

Most iDigBio users are interested in downloading occurrence records:

r library("ridigbio") idig_search_records(rq=list(genus="galax")) idig_search_records(rq=list(family="diapensiaceae"), limit=1000)

Meta

Owner

  • Name: iDigBio
  • Login: iDigBio
  • Kind: organization
  • Location: United States of America

iDigBio is coordinating the national effort to digitize biodiversity specimens and make them available online, funded by NSF grants to UF, FSU, and ASU.

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 3
  • Push event: 8
Last Year
  • Issues event: 2
  • Issue comment event: 3
  • Push event: 8

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 145
  • Total Committers: 8
  • Avg Commits per committer: 18.125
  • Development Distribution Score (DDS): 0.186
Past Year
  • Commits: 4
  • Committers: 1
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Matthew Collins m****s@a****u 118
Francois Michonneau f****u@g****m 13
jbennettufl j****l@g****m 4
mokelly2 m****2@g****m 3
Nicholas Rejack n****k@u****u 3
Scott Chamberlain m****s@g****m 2
Kevin Love k****e@u****u 1
Kevin Love k****e@f****u 1
Committer Domains (Top 20 + Academic)
ufl.edu: 2 flmnh.ufl.edu: 1 acis.ufl.edu: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 37
  • Total pull requests: 17
  • Average time to close issues: 7 months
  • Average time to close pull requests: 2 months
  • Total issue authors: 13
  • Total pull request authors: 8
  • Average comments per issue: 2.38
  • Average comments per pull request: 1.29
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 3
  • Average time to close issues: 3 days
  • Average time to close pull requests: 11 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.33
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mjcollin (15)
  • sckott (4)
  • mgaynor1 (4)
  • seltmann (4)
  • nrejack (2)
  • tphilippi (1)
  • fmichonneau (1)
  • pbuttigieg (1)
  • hadley (1)
  • roncanepa (1)
  • kevinlove (1)
  • hmorzaria (1)
  • sagesteppe (1)
Pull Request Authors
  • jbennettufl (6)
  • mgaynor1 (6)
  • fmichonneau (4)
  • kevinlove (2)
  • adamdsmith (1)
  • nrejack (1)
  • sckott (1)
  • hmorzaria (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 3
  • Total downloads:
    • cran 2,611 last-month
  • Total docker downloads: 88,629
  • Total dependent packages: 3
    (may contain duplicates)
  • Total dependent repositories: 4
    (may contain duplicates)
  • Total versions: 27
  • Total maintainers: 1
proxy.golang.org: github.com/idigbio/ridigbio
  • Versions: 12
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.5%
Average: 5.7%
Dependent repos count: 5.9%
Last synced: 10 months ago
cran.r-project.org: ridigbio

Interface to the iDigBio Data API

  • Versions: 13
  • Dependent Packages: 2
  • Dependent Repositories: 3
  • Downloads: 2,611 Last month
  • Docker Downloads: 88,629
Rankings
Forks count: 6.3%
Downloads: 8.3%
Stargazers count: 14.1%
Average: 14.7%
Dependent repos count: 16.5%
Dependent packages count: 18.1%
Docker downloads count: 24.8%
Maintainers (1)
j3553@ufl.edu
Last synced: 10 months ago
conda-forge.org: r-ridigbio
  • Versions: 2
  • Dependent Packages: 1
  • Dependent Repositories: 1
Rankings
Dependent repos count: 24.3%
Dependent packages count: 29.0%
Average: 37.5%
Forks count: 43.8%
Stargazers count: 52.9%
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.0.1 depends
  • httr * imports
  • jsonlite * imports
  • plyr * imports
  • stats * imports
  • testthat * suggests